Selaginella moellendorffii: SELMODRAFT_147206
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Entry
SELMODRAFT_147206 CDS
T01496
Name
(RefSeq) hypothetical protein
KO
K10143
E3 ubiquitin-protein ligase RFWD2 [EC:
2.3.2.27
]
Organism
smo
Selaginella moellendorffii
Pathway
smo04120
Ubiquitin mediated proteolysis
smo04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
smo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
SELMODRAFT_147206
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
SELMODRAFT_147206
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
smo04121
]
SELMODRAFT_147206
Enzymes [BR:
smo01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
SELMODRAFT_147206
Ubiquitin system [BR:
smo04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
SELMODRAFT_147206
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
SELMODRAFT_147206
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_CDC20-Fz
WD40
Beta-prop_TEP1_2nd
WD40_Prp19
Beta-prop_EML_2
WD40_WDHD1_1st
Beta-prop_RIG_2nd
WDR55
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_C
ANAPC4_WD40
EIF3I
Beta-prop_EIPR1
Beta-prop_WDR19_1st
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
Beta-prop_DCAF12
Beta-prop_WDR75_1st
WD40_RFWD3
WD40_like
Beta-prop_SCAP
Motif
Other DBs
NCBI-GeneID:
9631797
NCBI-ProteinID:
XP_002970357
JGI:
147206
UniProt:
D8RH86
LinkDB
All DBs
Position
Unknown
AA seq
467 aa
AA seq
DB search
MEVSNGAIGQRGGGGGTLLCIPSDTLADDKRLKKRSRRLLVSDSTGESHNNAKRSAAMYS
TAFNFKLPGTTKTYPGTSTTNSSLDPPVDSSRMPEPESCDQSRHETWEFETLVPFSCETP
SLLSSDVISTIDYDETGQLIATGGLARKIRICSYQELVNGMGRECFQGRNVKNLFTTICM
PAKLSSLKWRPGGSEVIACGDYDGSVTEWDVEHGVTVSERYEHTGRTVWSIDYSRDFRGL
LASASSDSTVRFWSRNVERSVGIIKSLKRNSMCCVEFGRSSGPCCYVAVACADASVYLYD
MRSLGSPVATLRGHERSVSYVRWLGENSLVSSSPDGTIRLWDIASTVTGTGESWHARNDE
LPIARTFGCHSNTRNFVGLSVASSGGGSGGLIASGSENNEVFVYSSSVSERPVFRHKFND
AVVLDDKAFVGSVCWTKQQDHLSLISANSEGIVQVIRATTTATARHT
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
atggaggtgtccaatggagcaatcgggcagagaggaggcggtggaggaacgctgctttgc
attcccagcgacacgctcgcagatgataaacggctgaagaaacgttcgcgcaggctgctc
gtctcggatagcactggtgagtcccacaacaatgcgaagcgatcggcagcaatgtactcc
acagctttcaacttcaagctcccggggaccacgaaaacttatcctgggaccagcactacc
aacagctctttggacccgccagtggattcatcgcgaatgccggagccggagtcgtgtgat
cagtccaggcacgaaacatgggagtttgagacgctggtcccgtttagctgcgaaacgcca
tcgctgctgtcgtcggacgtgatctccacgatcgactacgatgaaaccggacagctgata
gctactggtgggctggcgaggaagatcaggatttgctcgtaccaggagctagtgaacggg
atgggaagggagtgtttccaggggcgcaacgtgaaaaacctcttcaccaccatttgcatg
ccggcaaagctcagcagcctcaagtggaggccggggggctccgaggtgatcgcttgcggt
gactacgatggctcggtcacggagtgggacgtagagcacggggtcactgtgagtgaaaga
tacgagcacacgggacgaacagtgtggagcatcgactacagcagggacttccggggcctg
ctagcgtcggcgtcgagcgacagcaccgtgaggttttggagcaggaatgtggagcggagc
gttgggatcatcaagtcccttaagcggaactcgatgtgctgcgtggagttcggccgctcc
tccggtccctgctgctacgttgccgtggcctgcgccgacgcgagtgtgtatctgtatgat
atgcggagcctggggagcccagtcgcgaccctgcgaggccacgagaggtccgtgagctac
gtgagatggctgggcgagaacagcttggtgtcctcgtctccagacggcacgattcgactg
tgggatatcgcctcgacagtaactggtaccggcgagagttggcacgctcggaacgacgag
ctgccgatcgcgagaacttttggctgtcactccaacaccaggaactttgttggactgtcc
gttgcgagctccggcggcggctccggcgggctcatcgcgtccgggtccgagaacaacgaa
gtttttgtgtacagctcttccgtctcggagagacccgtcttccggcacaagttcaacgat
gcggtcgtgctggatgataaggccttcgtggggtcggtttgctggaccaagcaacaagat
cacttgtccttgatctcggcaaactccgaaggcattgtgcaggttatacgggccacaaca
acagcaacagcgcgacatacatga
DBGET
integrated database retrieval system