Selaginella moellendorffii: SELMODRAFT_148107 Help Entry SELMODRAFT_148107 CDS       T01496                                  Name (RefSeq) hypothetical protein   KO K03010   DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6] Organism smo  Selaginella moellendorffii Pathway smo03020   RNA polymerase smo03420   Nucleotide excision repair Brite KEGG Orthology (KO) [BR:smo00001]  09120 Genetic Information Processing   09121 Transcription    03020 RNA polymerase     SELMODRAFT_148107   09124 Replication and repair    03420 Nucleotide excision repair     SELMODRAFT_148107  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03021 Transcription machinery [BR:smo03021]     SELMODRAFT_148107    03400 DNA repair and recombination proteins [BR:smo03400]     SELMODRAFT_148107 Enzymes [BR:smo01000]  2. Transferases   2.7  Transferring phosphorus-containing groups    2.7.7  Nucleotidyltransferases     2.7.7.6  DNA-directed RNA polymerase      SELMODRAFT_148107 Transcription machinery [BR:smo03021]  Eukaryotic type   RNA polymerase II system    RNA polymerase II     Core subunits      SELMODRAFT_148107 DNA repair and recombination proteins [BR:smo03400]  Eukaryotic type   SSBR (single strand breaks repair)    NER (nucleotide excision repair)     TCR (transcription coupled repair) factors      DNA-directed RNA polymerase II complex       SELMODRAFT_148107 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_2 RNA_pol_Rpb2_7 RNA_pol_Rpb2_4 RNA_pol_Rpb2_3 RNA_pol_Rpb2_5 Zn_ribbon_RPB9 Zn_ribbon_IS1595 Motif Other DBs NCBI-GeneID:  9640680 NCBI-ProteinID:  XP_002971836 JGI:  148107 UniProt:  D8RLN5 LinkDB All DBs Position Unknown AA seq 1178 aa AA seqDB search MDEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESSEIEIKPESQHN PGRNNEYSGETTFKIKFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYADIIKY VTRKGEDGEEDTEQEELPKVFIGKVPIMLRSSYCTLYQNSDKDLTELGECPYDQGGYFII NGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPASSMFVRMLSRAGAK AGSSGQYIRATLPYIKQEIPIIVVFRALGFVADKDILEHICYDFSDTAMMELLRPSLEEA FVIQNQQVALDYIGKRGSTVGVTREKRIKYAKDILQKEMLPHVGVGEYCETKKAYFFGYI IHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGSLFRQLFRKLTKDVRAYLQKCVDNGKE VNLAYAVKAKTITSGLKYSLATGNWGQANSGNARAGVSQVLNRLTYASTLSHLRRLNSPI GREGRLLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMAYITVGSAANPILVFLEEW STENFEEISPAVIPNATKIFVNGAWVGIHREPEHLVKTLRQLRRQVDVNTEVGVVRDIRL KELRLYTDYGRCSRPLFIVEKQRLLIKKSDIRALQQKEAGENGWHELVSKGFIEYVDTEE EETTMISMTISDLVNARLNPEEAYSDTYTHCEIHPSMILGVCGSIIPFPDHNQSPRNTYQ SAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACY SGYNQEDSVIMNQSSIDRGFFRSIFYRSYRDEEKKAGTLVKEEFERPNRETTTGMRHGSY DKLDDDGIAPPGTRVSGEDVIIGKTTPLVQDETGTQAQRYSKRDQSTCLRHSESGMIDQV LLTTNADGLRFVKTRVRSIRIPQIGDKFSSRHGQKGTIGMTYTQEDMPFTQEGITPDIIV NPHAIPSRMTIGQLIECIMGKVAALMGKEGDATPFTDVTVDNISKALHKCNYQLRGFETM YNGHTGRRLSAMIFIGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGE MERDCMIAHGAAHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNTFECRSCKNKTEIVQ VHIPYACKLLFQELMAMAIAPRMFMKEVKKLKGHVKKV NT seq 3537 nt NT seq  +upstreamnt  +downstreamnt atggatgaggaggaggaaatcacacaggaggatgcctgggccgtcattagtgcctacttc gaggagaaggggctagtgcgccagcagctcgactcgttcgacgagttcatccagaacacg atgcaggaaatcgtggatgagtcgtcggagatcgaaattaagcccgagtcgcagcacaac cctggccggaataacgaatattccggagagaccactttcaagatcaagtttggacagatt tatctgagcaagcctatgatgaccgagtctgatggagaaaccgcaactttgttcccaaaa gctgcccggctcaggaatctaacgtactcggctcctttgtacgccgatatcatcaagtat gtcactcgaaaaggagaggacggcgaagaagacaccgagcaggaagagctgccgaaagtc ttcattggaaaggttcctatcatgcttagatcgagctactgtacattgtatcagaactct gataaagaccttactgagcttggcgagtgtccatacgatcaaggaggctactttatcatt aacgggagtgagaaggtcctcattgcacaagaaaagatgagtaccaatcacgtctacgtg ttcaaaaagaggcagccaaacaaatatgcttacgttgctgaggttcgttctatggcggag tcccagaacagacccgcgagcagtatgttcgtccgaatgctgtcacgagccggagccaaa gcggggtcttctggccaatatattcgagcaacactgccttatatcaaacaagaaatccca atcatagtggtttttcgagcacttggattcgtggctgataaagacatccttgagcatatc tgttatgactttagcgacacggccatgatggaattgctaaggccatctttggaagaggca ttcgtcatacagaaccaacaagttgctttggactatattggcaaaagaggctccactgtg ggtgttaccagggagaagcgtatcaagtatgcaaaagacattctgcaaaaagaaatgtta ccgcacgttggagtcggggaatattgtgagacgaagaaagcgtacttttttggatacatc atacatcgtctattattatgtgcgttgggccgtcgtgctgaagacgatcgagaccattat gggaacaagcgtctagatcttgctggtccgctgctaggtagtctgttccggcagttgttc aggaagctgactaaagatgtccgagcctatctacaaaagtgcgtagacaatgggaaggaa gtaaatcttgcatatgctgtcaaagccaagacaatcactagtggattgaagtattccctt gcgactggaaactggggacaagcaaactcaggcaatgcacgagcaggagtgtcacaggtt ctcaatcgtctgacgtatgcctcaacattgtcacacttgcgaagattaaattctccaatt ggacgtgaaggtaggcttctggcaaagcctcgtcagcttcataattctcactggggtatg atgtgtcctgccgaaactccggaaggtcaagcatgcggtttggtaaaaaatttggcacta atggcttatatcaccgtcgggtcagctgccaatcccatattggtttttctggaagagtgg agtactgagaactttgaggaaatttcaccagcagtaatcccaaatgcaactaaaatcttt gtgaatggtgcatgggttgggatacacagagagccggagcacttggttaaaacattgcgg cagctgcgtagacaggtcgatgtgaatacagaagttggtgttgtaagagacattcggctc aaggagctccggttgtacacagactatggaagatgcagccggcctctctttattgttgag aaacaaaggctgctgataaagaagtcagatatcagagcactgcagcaaaaggaagctgga gaaaatggatggcacgagctggtatccaaaggatttattgagtacgttgacaccgaggaa gaagaaacaactatgatatccatgactatttcggatcttgtcaatgctcgattgaatccc gaagaggcatattcagatacttatacacattgcgaaatccacccgtccatgattttgggc gtctgtgggtcgattattcctttccccgaccataaccagtcccctcgtaatacataccaa tcagctatgggaaagcaagctatgggtatatacgtgacaaactaccaactacgtatggat acccttgcttatgtgttgtactaccctcaaaagcctcttgtgacaactcgtgctatggag cacctgcattttcgacaacttcccgctggcattaatgctattgtggcaattgcatgctat tccggatacaatcaagaggattcggttattatgaaccagtcatccatcgaccgcggcttt ttccgctccatcttttatcgctcttacagggatgaggaaaagaaagctggaacgttggtg aaagaagaatttgaacgtcccaacagggagacgacgacgggaatgcggcatggatcatat gataagctcgatgatgatggcatcgcaccgcccggaacgagggtgtctggggaggatgtg attattgggaagaccacaccgctggtccaagacgaaactgggactcaagctcaacggtat tcaaagagggatcagagtacgtgtctacgccatagtgaaagtggaatgatcgatcaggtg ttacttacgaccaatgcggatggtttgcgttttgtcaagacaagggtgcgatccatacgc atccctcaaattggtgacaagtttagtagcagacacgggcagaagggtactattggaatg acgtacacgcaagaagacatgcccttcacacaagaaggcataacaccggatatcatcgtg aatccgcatgctattccatcccgcatgaccattggccagctgatcgagtgtatcatgggt aaagttgcagcgctcatgggaaaagaaggtgatgcgacgccattcactgatgtcacggtg gataacatcagcaaagcactccacaagtgtaactatcagttaagaggcttcgagacaatg tacaacggacacaccggtcgcagactgagtgccatgattttcatcgggccaacatactac cagcggttgaagcatatggtcgacgacaagattcactcccgtgggcgtggtcctgttcaa atacttacgcgccagcccgcagaaggtcgatcaagggacggaggccttcgttttggtgaa atggagcgggactgcatgatcgcacacggagcagcgcattttctcaaggagcgcctgttt gatcagagcgacgcgtatcgcgtccacgtttgcgagcattgcggtctgattgcgatcgcg aacctgaagaagaatacgttcgagtgccggagctgcaaaaacaagacggagattgttcag gttcatataccatacgcttgcaagcttttgttccaagagctaatggctatggctatagcg cctcgaatgttcatgaaggaggttaagaagctcaaaggacacgtaaagaaggtttaa

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