Selaginella moellendorffii: SELMODRAFT_154147
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Entry
SELMODRAFT_154147 CDS
T01496
Name
(RefSeq) hypothetical protein
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
smo
Selaginella moellendorffii
Pathway
smo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SELMODRAFT_154147
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smo03019
]
SELMODRAFT_154147
03012 Translation factors [BR:
smo03012
]
SELMODRAFT_154147
Enzymes [BR:
smo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
SELMODRAFT_154147
Messenger RNA biogenesis [BR:
smo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
SELMODRAFT_154147
Translation factors [BR:
smo03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
SELMODRAFT_154147
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
T2SSE
AAA_19
Rad17
Motif
Other DBs
NCBI-GeneID:
9657347
NCBI-ProteinID:
XP_002980920
JGI:
154147
UniProt:
D8SC12
LinkDB
All DBs
Position
Unknown
AA seq
1118 aa
AA seq
DB search
MSLLLQSSKNEIMSMESKDLKCYNAISYIAKELGLYINLYWKTIVVSKLPLPLYRPDLDP
DRPQRQVRIFTFIFFGNYVLSLPAFLDEYKRHRKEKEAKVELFPIVAPEQPPQSLPDVYD
PLAGIFGDAKKSKLMFDRQRAWQDSREGQIALGFRSKLPAFQLRSAFLESLSRCQVLVVT
GGTGCGKTTQLPQYILESEIDGGCGSSCKIVCTQPRRISASSVALRVAEERGEVLGESVG
YQVRFDSVRSRSTSLLFCTTGILLRRLMSDPVLNGVTHVIVDEIHERGLNEDFLLIVLRD
VIQRRPDLKLILMSATVDAKLFEKYFLDLNTRCMDIPGFAYTVKSYYLEDVLNITGYKLS
MQSRMWKYLRQAPEASDLRAHISEENIVREALNAEDYSNAGEESIDFTLIEKLLCHVCEH
GQEGAVLVFMTGWEDISALRRQLRTHPVLGHPSRVWLLACHGTMSPDEQKRIFERPPSRV
RKIILATNIAETSITVEDVVYVVDIGKAKEKSYDVATNTACLLPRWISKSSVRQRKGRAG
RLKPGVCYHLYPESVFQAFEDHNEPEILRTALHNVCLRIKGLQLGDIQTFLAKAIEPPNR
HAVHIAIEFLKVIGALDETEDLTVLGKHLAILPVEPQIGKMLIMGCIFQCLDPMLTIAAA
LSSRDPFILPVDKREDSNQAKFKFSIGEMSDHLAVVRAFNDWEVCMKHNTASEFCRANFL
SMQVLIGMTSMRKQFLSLLQEAGYLDGGLASCEAYSSDPMIVRAVICAGLFPGVAAVVAT
PGSVTHKTMDGTVVHVHPHSVNARHEESCFPWLVFLEKIKTSNVFIRDSTGISDSMLLLF
GGALVSIGQPGHLQMCGKCLEFFMGESEAELFQEMRDLLDELLKLKLARPDLDIYKHRDG
LLMRAVMLMIRGDALAGKFMYGKRTDVGTFDGLIGDKDSKVALRVALLREGLTRRPSVST
KLNRAKQHVSTIQFRGLKFIGEPDRLKRQAERNACAEAVAWLANPDNAEKKKLLMWGGGK
LTKVRLGDCMGQLKKLLGKLPPEDEERLRSFEDPKSKKQRSNALVPIDEKKNSKIRKSRK
ANEEIVTQRAKRRANFQKLVEKSETPVFGGCSLPPRPG
NT seq
3357 nt
NT seq
+upstream
nt +downstream
nt
atgtctttgcttcttcagtcttccaagaacgagataatgtccatggaaagtaaagatctc
aagtgctacaatgctataagctacattgccaaagagcttggtctctacattaatctctac
tggaaaaccatcgttgtcagtaagcttcctctaccattgtatagaccggacttggatccg
gatcgtccgcaacgacaggttcggatcttcaccttcatcttttttggaaattatgttctt
tcacttccagcgtttctagacgagtataaacggcacaggaaagagaaggaagccaaggtg
gagctctttccaatcgttgctccagaacagccccctcagtctcttccggatgtttatgat
ccgctagctggtatttttggcgatgcgaaaaagagcaagcttatgtttgatagacaacgc
gcatggcaggactctcgagagggacaaatagctcttgggtttcgtagtaaacttccagcg
tttcagttaaggtctgcattcctcgagtcactgtcccgttgtcaggttctggtggtaact
ggaggaactggctgtggcaaaacaacacaacttccacaatatatacttgaatctgagatt
gatggtggatgcggttcgtcgtgtaagattgtttgcacccagcccaggcgtatctcagct
tcctctgtcgctttgagagtggcggaagaacgcggtgaagttcttggtgaatctgtagga
tatcaggtgcggttcgactcagtgagaagccggtctacgagcctgctgttttgcaccacg
ggtatattgctaaggcggttgatgtctgatccagtcttgaacggagtgacgcacgtaatt
gtcgacgagatacatgagcggggtttaaacgaagattttcttcttattgttttaagagat
gtcatccagcgccgtcccgatttgaaactcattcttatgagcgctactgtggacgctaag
ctttttgagaagtatttcttggatttgaatactcgttgcatggatataccgggatttgca
tacactgtgaaatcttactatttagaagacgttttgaacataacaggatacaaattgagc
atgcagtcaagaatgtggaagtatctacggcaagcgcctgaagcctccgatctgcgggcc
catatttcagaggagaatatcgtcagagaagctctcaatgctgaagattacagcaatgct
ggagaagaaagtatcgatttcaccttgatagagaagctactctgtcacgtctgcgagcat
ggccaagaaggtgcggtgctggtttttatgactggctgggaagatatttctgctttgagg
cgtcagctaagaacccatcctgtgctaggccatcctagcagggtgtggcttcttgcgtgc
catggaaccatgtcgcccgacgaacagaagagaatttttgagcgtccaccttcacgtgta
cggaagatcatcctggcaacaaacattgccgaaactagcatcacggttgaggacgttgtg
tacgttgtcgatataggaaaagccaaagagaagagctatgatgttgcaacaaacactgca
tgtttgttgccaagatggatttccaagtcgtctgtgcgccagaggaaaggcagagctggg
cgtttgaaaccaggtgtttgttaccatctctatccagaatccgtttttcaagcgtttgag
gaccacaatgaacctgagatattgagaacagctctacacaacgtatgcctcaggattaag
ggattgcaacttggagatatccagacgttcttggcaaaagctatagagcctcccaaccga
cacgcagtgcacatcgccatagagttcttgaaggtgattggtgcattggatgaaacagaa
gatctgacggttcttggaaaacatctagcaatacttccagttgaaccgcagattggaaaa
atgttgatcatggggtgtatttttcaatgccttgatcccatgcttactattgctgctgca
ctttcgtcccgggatccatttattcttcccgtggacaagcgagaggattccaatcaagcc
aagttcaagttttccataggagaaatgagtgaccacctcgcggttgttcgagcattcaac
gactgggaagtgtgcatgaagcacaatacggcatcggagttctgccgtgcaaactttctt
tccatgcaagtgttgataggaatgacttccatgagaaagcaattcctatcactattgcag
gaagccggttatctcgacggcggcttggcgagttgcgaagcttattcatctgatccaatg
attgtccgagctgtgatttgcgctggtttgttcccgggagttgcagctgttgtggcaact
cctggatcagtgacccacaagacaatggacgggactgtagtgcacgttcatccacactca
gtgaatgcaaggcacgaggaaagctgctttccatggctggtgttccttgagaagataaag
acatctaacgtgttcattcgagactcaacgggtatatcggactcgatgctacttttgttc
gggggagcgttggtgtcgataggccagccaggacatttgcaaatgtgtgggaagtgcttg
gagttcttcatgggtgagagcgaggccgaattattccaggaaatgcgagatcttttggat
gagcttctgaagctaaagctagcaaggcccgacctcgacatctacaaacaccgagatggt
ctgctcatgcgagcagtgatgctcatgatcagaggcgacgctcttgccggcaagttcatg
tatgggaagagaacagacgtaggtactttcgatggtctcatcggcgacaaggactccaaa
gtagcactccgagtagctctccttcgggaaggactgactagaaggccgtccgtgtccacg
aagctaaaccgagcaaagcagcacgtctccacgatccagttccgaggtctcaagtttatc
ggcgagccggacaggcttaagaggcaagctgagaggaatgcttgcgccgaggcggtggca
tggctcgcaaatccagacaacgccgagaagaagaagcttctaatgtgggggggaggaaag
ctcaccaaagtccggcttggagattgcatgggacagctgaagaagctcctgggaaaactt
ccaccggaggacgaagaacgcttgcgaagctttgaagatcccaagagcaagaagcagcga
agcaatgctctcgttccaatcgacgagaaaaagaattcgaagatcaggaagagcaggaaa
gcgaacgaggagattgtcacgcaacgagcaaagcgtagagcgaatttccaaaagcttgtg
gagaagagcgagactccggtatttggagggtgctctctcccgccacgaccagggtga
DBGET
integrated database retrieval system
