Selaginella moellendorffii: SELMODRAFT_154507
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Entry
SELMODRAFT_154507 CDS
T01496
Name
(RefSeq) hypothetical protein
KO
K14327
regulator of nonsense transcripts 2
Organism
smo
Selaginella moellendorffii
Pathway
smo03013
Nucleocytoplasmic transport
smo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
smo00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
SELMODRAFT_154507
03015 mRNA surveillance pathway
SELMODRAFT_154507
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smo03019
]
SELMODRAFT_154507
Messenger RNA biogenesis [BR:
smo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
SELMODRAFT_154507
mRNA cycle factors
P-body specific factors
SELMODRAFT_154507
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G
Upf2
Glycos_transf_N
Motif
Other DBs
NCBI-GeneID:
9647611
NCBI-ProteinID:
XP_002981454
JGI:
154507
UniProt:
D8SDL0
LinkDB
All DBs
Position
Unknown
AA seq
1142 aa
AA seq
DB search
MKKQIEAKRALRRANFSPDRPDASFLRTLDSSIKRNTAVIKKLKQINEEQRDGLLEELKS
VNLSKFVTEAVTSICDAKLKSSDINAAVQVCSLLHQRYKDFAPNLVQGLLKVFLPGKAGE
ELDSDRSSRAMRKRSTLKLLMELYVCGVTEDAGIFVSIVKDLTSSDHLRDREATQTNLSL
LVAFTRQGRFLLGLPLGSPDSQEEFYKEINASQDHKKQLKKMIQSFYDSAVFLLQSEHAA
LRQIEHENARMLNAKGELSEENAASYEKMRKSYDHLFRSISSLAEAMDIQPPVMPEDAHT
TRLSAGEEGASSPAGKEPASVEPIWDDEDTRLFYESLPDLRAFVPAVLLGESESKSGESK
TPEQEVRADSELGTAEVHVPSNEAENASGEVVPEEKNPNSEKAREKEKDKDEPESSRKEK
EHEKEKWKSFGDGGNLDSLLQRLPGAVSRDLIDQLTVDFCYVNSKSNRKKLVRTLFNVPR
TSLELLPHYSRMVATLSTCMKDITPMLLQLLEDEFNFLINKKDQMNIETKIKNIRFLGEL
AKFRVAPSTLIFTCLKSCLDDFSHHNIDVACNLLETCGRFLYRSPETSVRMGNMLDIIMR
LKNVKNLDARHSTLVENAYYQCRPPERSARVSKVRPLLHQYIRKLLFLDLDKSSIERILR
QLRKMPWDECEDYVLKCFMKVHKIKYNQVHLVASLTAGLNRYHDSFAVAVVDEVLEEIRV
GLEQNEYGMQQRRIVFMRFLGELYNYRLIDSCVIFETLYLIIFYGHGTPEQELLDPTEDY
FRIRLVIMLLQTCGQFFDRGSSKRKLDRFLLFFQRYVLAKGSIPLDVEFDLQDLFADLRP
KMTRYATFEEANQALLEMEERENMMMEKAANGKYLEMEVPFSAEPSQVVGNGGNVLRREN
GVDEGESLSETESGSMDGHEEEEDDVERDEEGEEEEEEAELEHAAVSEEDDHVKLRCKSK
EVDPLEDADFEKELRALMQESVDSRKSELRARPTLNMMMPMNLLEGTKDHGRAQDPESGD
EGIDEHGSGHNVAFRVLVKKGNKHQLKQLKIPRDSSLVQSTRQKEAAELEEKQDIKRLVL
EYNEREEDERTGGTTQPLNWSSSSPSRSPGGGRGGAYDAGSAARSSVSRQRRPLAAGYGR
RR
NT seq
3429 nt
NT seq
+upstream
nt +downstream
nt
atgaagaaacaaatagaagccaagcgagctctgcgtcgtgcaaatttttctccggataga
cctgatgcaagtttccttagaactttggactcgagtatcaaacgcaataccgctgtgatt
aagaagctcaagcagatcaatgaagagcagcgtgatgggttactagaggagctcaagtct
gtgaatttgagcaagtttgtcaccgaggctgtgacgtccatttgcgatgccaagcttaaa
agctccgacatcaatgctgctgtccaggtgtgctctttgcttcatcaaaggtacaaagac
tttgctcccaacctcgtacaaggtctattgaaagtgttcttgccggggaaggctggcgaa
gagctagacagtgatcggagctctcgggctatgagaaagcgaagtactctcaagcttttg
atggagctctacgtctgcggggttactgaagacgctgggatcttcgttagcattgtcaag
gaccttacaagcagtgaccacttgcgagatcgagaggcaacgcaaacaaacctgtcgttg
cttgtagcttttacacgccaagggaggtttctactcgggctcccactgggaagtcctgac
agccaagaggagttttacaaagagattaacgctagtcaggatcacaagaagcagctgaag
aaaatgatacaatccttttacgactctgcagtgtttctccttcagtccgaacatgcggcc
cttcgtcagatcgaacacgaaaatgcccgcatgctcaacgctaaaggagaacttagcgag
gaaaatgctgcgtcctacgaaaaaatgcggaagtcatacgaccatctctttcggagtatt
tcctcactggccgaagcgatggacatacaaccacctgtgatgccagaggatgctcataca
acgcgcctgtcggcgggggaagaaggggcttcttcgcctgcaggaaaagaacctgcatcc
gtggagcctatatgggatgacgaagatactcggctattttacgaaagtcttccagattta
cgggcctttgttcctgctgttttactgggagaatcagagtcaaaatctggtgaatccaaa
acgccagaacaggaagtacgagctgactccgaacttggtacagcggaagttcatgttcca
tcgaatgaggccgagaatgctagcggtgaagtcgttcctgaagaaaagaatccaaactct
gaaaaggctagagagaaggagaaggacaaagatgaacctgaaagtagccggaaggaaaag
gaacacgagaaagagaagtggaaatcttttggggatggtggaaatcttgacagcctcttg
caaagacttcctggagcagtcagtcgggatttgatcgatcagctcacagtcgatttttgt
tacgtgaactcaaaaagcaacagaaagaagctggtgcggacgttgtttaatgtgcctcgc
acctcgttagagctgctgccgcactattctaggatggtagcgacgctttcgacttgcatg
aaagacatcactccaatgcttcttcagttgcttgaagacgaattcaacttcctcataaat
aagaaggatcaaatgaacatcgaaactaaaataaaaaatattcgattcttaggagagctg
gctaagttccgggtggctccttccaccctgatatttacatgtttaaagtcttgcttggac
gatttcagccaccataacatcgatgtagcttgcaacttgctggagacctgtggtcgattc
ttataccgctctccagaaacgtccgttagaatgggaaacatgctagatattattatgcgg
ctaaagaacgtgaagaatcttgatgcccggcatagcacactggtcgaaaatgcctattat
caatgccggcctccagagcgatcagcccgtgtctccaaagttcggcctcttttacatcag
tacatccgaaagctactgtttttagatctcgacaagtcctccatcgagcgtattttgcga
caactgcgcaaaatgccatgggatgaatgcgaggattatgttttgaagtgtttcatgaag
gttcataagatcaaatacaaccaagtacatctagtcgcgtccctgacggctggtttaaat
cgctaccatgactcatttgctgttgcagttgtggatgaggtgcttgaagaaatcagagta
ggattggagcagaatgagtatggcatgcagcagcgtaggatagtattcatgcggttttta
ggcgagctctataactatcgactcattgactcctgcgtaatatttgaaactctttacctg
atcatcttttatggtcacggaactcccgagcaagaacttctggatcctacagaagattat
tttcgtatccgactggtgataatgcttcttcagacgtgtggccagtttttcgatcgaggc
tcgtcgaaaaggaaactggacaggtttctattgttctttcaaagatatgtccttgcgaag
ggatcgattcctctggacgtggagttcgatctacaggaccttttcgcagacttgcgcccg
aaaatgacacggtacgcaacattcgaggaagcgaatcaagcactgttagagatggaagaa
agagaaaacatgatgatggagaaggcggccaacgggaagtacttagagatggaagtacct
ttctctgcggagccaagtcaagtggtcgggaacggaggcaacgttcttcgtcgtgagaat
ggagttgacgaaggcgagagcctcagtgagacggaaagcggaagcatggacggacacgag
gaggaggaggacgacgtcgaacgagacgaagaaggcgaggaggaagaagaagaagcggag
ctcgagcacgcagcggtatccgaggaggacgaccacgtcaagctccggtgcaagtcgaaa
gaagtggatccccttgaggacgccgactttgagaaggagctccgggccttgatgcaagag
agcgtcgactcgaggaagtcggagctgcgagcacggccaacgctcaacatgatgatgccg
atgaatctgctcgaggggaccaaagaccacggtcgagcacaggaccccgagagtggcgac
gaaggcattgacgagcacggctcgggacacaacgtggctttcagagttctcgtgaagaaa
ggcaacaagcatcagctcaagcagctcaagatcccgcgagactcgtcacttgtgcaaagc
acgaggcagaaagaagccgcggagctggaagagaagcaggatatcaaaaggctggtcttg
gagtacaacgagagagaagaagacgagagaactggtggaactacgcagccattgaactgg
tcctcgtcgtctccatctagaagtcccggaggtggccgtggaggagcatatgacgctggt
agcgcggcgagatccagcgtttctcgccagagaaggcctctggcagctggttatggccgg
aggagatag
DBGET
integrated database retrieval system
