KEGG   Selaginella moellendorffii: SELMODRAFT_164382
Entry
SELMODRAFT_164382 CDS       T01496                                 
Name
(RefSeq) hypothetical protein
  KO
K13025  ATP-dependent RNA helicase [EC:5.6.2.7]
Organism
smo  Selaginella moellendorffii
Pathway
smo03013  Nucleocytoplasmic transport
smo03015  mRNA surveillance pathway
smo03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:smo00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    SELMODRAFT_164382
  09122 Translation
   03013 Nucleocytoplasmic transport
    SELMODRAFT_164382
   03015 mRNA surveillance pathway
    SELMODRAFT_164382
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:smo03019]
    SELMODRAFT_164382
   03041 Spliceosome [BR:smo03041]
    SELMODRAFT_164382
   03009 Ribosome biogenesis [BR:smo03009]
    SELMODRAFT_164382
   03012 Translation factors [BR:smo03012]
    SELMODRAFT_164382
Enzymes [BR:smo01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     SELMODRAFT_164382
Messenger RNA biogenesis [BR:smo03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     SELMODRAFT_164382
   mRNA cycle factors
    Stress granule specific factors
     SELMODRAFT_164382
Spliceosome [BR:smo03041]
 Complex C
  Other components
   EJC/TREX
    SELMODRAFT_164382
Ribosome biogenesis [BR:smo03009]
 Eukaryotic type
  90S particles
   Helicases
    SELMODRAFT_164382
Translation factors [BR:smo03012]
 Eukaryotic type
  Initiation factors
   eIF-4
    SELMODRAFT_164382
SSDB
Motif
Pfam: DEAD Helicase_C ResIII AAA_19 Cas3-like_C_2 Helicase_RecD AAA_30 AAA_22 AAA TniB ATP-synt_ab
Other DBs
NCBI-GeneID: 9642679
NCBI-ProteinID: XP_002960579
JGI: 164382
UniProt: D8QNK4
LinkDB
Position
Unknown
AA seq 401 aa
MAAVRRGGNEDGDQHVVFETSAGVEAITQFEKMGINESLLRGVFEYGFERPSAIQQRALI
PIMRGRDVIAQAQSGTGKTSMIGIAVNQLIDTSVREVQALVLSPTRELADQTAKVVLTLG
SHMNVQAHTCIGGKSFSEDIRKLEHGVHVVSGTPGRVYDMLKRRTFRTRHVKILVLDESD
EMLSRGFKEQIIDCYRYLPPDLQVVLVSATLPHEILEMTNKFMTDPVRILVKRDELTLEG
IKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVEWLSEKMRSSNFTVSSMHGE
MPQKERDTIMKEFREGQTRVLITTDVWARGLDVQQVSLVINYDLPNSRELYIHRIGRSGR
FGRKGVAINFVKNDDIRILRDIEQYYSTQVDEMPMNVADLI
NT seq 1206 nt   +upstreamnt  +downstreamnt
atggcggcggtgcggcgcggcgggaacgaagatggcgaccagcacgtcgtcttcgagacg
agcgccggcgtcgaggcgatcacgcagtttgagaagatggggatcaacgagagccttctc
agaggtgtgtttgagtatggattcgagcggccgtcggcgatccagcagagggcgctcatt
ccgatcatgaggggccgggatgtcatagctcaagcgcaatccggcacaggcaagacatcc
atgatcggcattgcggtgaatcagctcattgacactagcgtgagagaggtccaagcgcta
gttctctcgccgacacgcgagcttgccgaccagactgccaaggtcgttctaacactgggc
agccacatgaacgttcaagctcatacgtgtatcggcggtaagagttttagcgaagacatt
agaaagctcgagcacggagttcatgtcgtgtctggaaccccgggtcgtgtctacgacatg
ctcaagcgccggactttcaggacgagacacgtcaagattttagttctggacgaatcagat
gaaatgctcagcaggggattcaaagagcaaatcatcgattgctatcgctacttacctccg
gatctacaagtggtccttgtttccgctactctaccgcatgagattcttgagatgaccaac
aagttcatgactgatcctgttcgcatccttgtcaaacgtgatgagttgacgctagaggga
atcaagcagttcttcgtggctgtcgagaaggaggagtggaagtttgacacgctgtgcgac
ctctacgacacactcaccattacccaggccgtgatcttttgcaacacgaaaaggaaggtg
gagtggctgtcggagaagatgcggagcagcaactttaccgtgtcgtcgatgcacggagag
atgccgcagaaagaaagggataccatcatgaaggagtttcgtgagggacaaacgcgggtg
ctcatcacaaccgatgtctgggctcggggtctggatgtacaacaggtctctctggtgatc
aactacgatcttccaaacagccgagagttgtacattcacaggattggacgctctggacgg
ttcggcagaaagggagtagcgatcaatttcgtgaagaacgatgacattcgaatcctccga
gatatcgagcaatactacagcacacaagtcgatgaaatgccaatgaatgtggccgacttg
atatga

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