Selaginella moellendorffii: SELMODRAFT_165735
Help
Entry
SELMODRAFT_165735 CDS
T01496
Name
(RefSeq) hypothetical protein
KO
K12858
ATP-dependent RNA helicase DDX23/PRP28 [EC:
5.6.2.7
]
Organism
smo
Selaginella moellendorffii
Pathway
smo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
smo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
SELMODRAFT_165735
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
smo03041
]
SELMODRAFT_165735
Enzymes [BR:
smo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SELMODRAFT_165735
Spliceosome [BR:
smo03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
SELMODRAFT_165735
Complex C
U5 SnRNP specific factors
SELMODRAFT_165735
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DDX23
ResIII
AAA_19
Cas3-like_C_2
HEM4
NUP42_C
Motif
Other DBs
NCBI-GeneID:
9661615
NCBI-ProteinID:
XP_002963123
JGI:
165735
UniProt:
D8QW75
LinkDB
All DBs
Position
Unknown
AA seq
574 aa
AA seq
DB search
MDAIKEQYLGTKKLKKRVVKPSEKFRFSFDWENTEDTSRDMNPIYQNPHEAQLLFGRGFR
AGMDRREQKKLAAKNEKDLRAEIRATKGLEEKPEEAKAQKLKEEAANAYDAFDMRVDRHW
SEKKLEDMTERDWRIFREDFNISYKGSRIPRPMRNWEEGGLSTELLKAVNKAGYKNPSPI
QMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPMTEENEAEGPYAVVMAPTR
ELAQQIEEETVKFAHYLDIHVVSIVGGQSIEEQGFKLRQGCEIVIATPGRLLDCLERRYA
VLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDAELDEKKIYRTTYMFSA
TMPPAVERLARKYLRNPVVVTIGTAGKTTDLITQNVLMVKDSEKLDRLQRMLNDLADKTA
IVFVNTKKAADGLARQLDKLGYRVTTLHGGKTQEQREISLEGFRSKRYNCLVATDVAGRG
IDIPDVAHVINFDMPNNIEMYTHRIGRTGRAGKTGVATTFLTLGDTEVFYDLKQMLVQSN
SPVPPELSRHEASKFKPGTIPDRPLRRNETLYAH
NT seq
1725 nt
NT seq
+upstream
nt +downstream
nt
atggatgcaatcaaagaacagtatcttggaacaaaaaagctaaagaaacgtgttgtgaag
ccaagcgaaaagttcagattctcattcgattgggaaaatacagaagatacttcaagagac
atgaacccgatatatcaaaatcctcacgaagcacagttgctttttggccgaggatttcgt
gccggcatggatcgaagggagcaaaagaagcttgctgcaaagaatgagaaggacctgcga
gctgaaatacgggcaaccaagggacttgaagaaaagccggaggaagcaaaggctcagaaa
ctcaaggaagaggctgcgaatgcatacgatgcatttgatatgcgtgtagatcggcattgg
tcagagaagaagctcgaggatatgactgagagagattggcgtattttccgagaggatttc
aacatctcatacaagggatcccgcatcccgcggcctatgcggaactgggaagaaggtggc
cttagtactgagctattgaaggctgttaacaaggctgggtacaagaatccgtctcccatc
caaatggctgcaattccactcggtcttcaacaaagagatgtcattggtattgcggaaacg
ggatccggcaaaacagctgcgtttgtgctaccaatgctcacgtacatatcaaggcttcct
cccatgactgaagagaacgaagccgaaggaccttatgcggttgtcatggctcctacgagg
gagcttgcgcagcaaattgaagaagaaactgtgaaatttgcacattatttggatatacat
gtggtgtcaattgttggaggacaatcaatagaggagcaaggttttaaacttcgccagggt
tgcgagatcgtgattgctacgcctggaaggcttttggattgccttgaacgcagatatgcg
gttctcaatcagtgcaactacgtggtactagatgaagcggaccgcatgatcgatatgggg
tttgagccgcaggtggtcggtgttcttgatgctatgccgtctagtaatctcaaacccgag
aacgaggacgcggaactggatgagaaaaagatttacagaactacttacatgtttagtgca
acgatgccgcctgccgtggaaaggcttgcacggaagtacttacgtaatccggtcgtagtt
acaattggaactgctggaaaaacaacggatctcatcacgcagaatgttctcatggtcaag
gattctgagaagctcgacagattacagcgcatgttgaatgatcttgcggacaagacggcc
atcgtgtttgtcaacaccaagaaagctgccgacggtctagcaaggcaactcgataagctg
ggctaccgagtgacgaccttgcacggtgggaaaactcaagaacagcgtgagatcagccta
gaaggatttcgtagcaaacgctacaactgcctcgttgccaccgacgtcgctggtcgtgga
atcgatatcccggacgtagcccatgtcattaactttgatatgccgaataacatcgagatg
tatacgcacaggatcggtcgtactggtcgcgcgggcaagactggcgtggccacgacgttc
ttaactttgggagataccgaagtgttttacgatctaaagcagatgcttgtgcagagcaac
agtcctgttcctccagagctgtcgagacacgaggcctccaaattcaagcctggaactata
cccgaccggccactacggaggaacgaaaccttgtatgctcattaa
DBGET
integrated database retrieval system
