Selaginella moellendorffii: SELMODRAFT_173562
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Entry
SELMODRAFT_173562 CDS
T01496
Name
(RefSeq) hypothetical protein
KO
K12879
THO complex subunit 2
Organism
smo
Selaginella moellendorffii
Pathway
smo03013
Nucleocytoplasmic transport
smo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
smo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
SELMODRAFT_173562
09122 Translation
03013 Nucleocytoplasmic transport
SELMODRAFT_173562
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smo03019
]
SELMODRAFT_173562
03041 Spliceosome [BR:
smo03041
]
SELMODRAFT_173562
Messenger RNA biogenesis [BR:
smo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
SELMODRAFT_173562
Spliceosome [BR:
smo03041
]
Complex C
Other components
EJC/TREX
SELMODRAFT_173562
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
SELMODRAFT_173562
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tho2
THOC2_N
Thoc2
ABPF_N
Motif
Other DBs
NCBI-GeneID:
9642807
NCBI-ProteinID:
XP_002973745
JGI:
173562
UniProt:
D8RRI3
LinkDB
All DBs
Position
Unknown
AA seq
1717 aa
AA seq
DB search
MALIALNCKYVTSEHIREWKSTNAATKIHAAVPPDRFIYELCWTMVRGELPLSKCRVGLD
AVNFLESTLKEDIASNFADAIAHMSLELTVPGEFRSRLVDLAKWLAESGLVPVRLFQERC
EAEFLWEVEMIKIKAPDLKSKEVRVNTRLLYQQTKFNLLREESEGYAKLVILYCCCFGSD
SSQSSSAVASSIKSLIGHFDLDPNRVFDIVLEFFELHPENTSFIGLMPLFRKSHLCHILG
FKFQYYQRPEIEEPVPTGLYRLAATLVKADFVDLDSIYAHLTPKDEEAFEQYEEILKRRM
EEANRIGKINLAATGKDLMEEEKPGDVNIDLYAALDGEVEATAERVMELVTNQKLGLLDG
FLTVGDWHHANILFERLAALNPVAHERISSGLIRIIENTIAPIYNRLRPSYFSKLNQEVS
TRKAPVTELRKELFQMLSWIGPYLYRDVILLQKVCKVLRGYYSSAVSAVNSTRSQEAEHK
DARAALKEARLKVEEALSACLLPSLQLLPANPAVCIAIWDVLSLLSYEVRYRIYGEWEKD
DESFPMLLAARQTAKLDTRRILKRLAKENLKQLGRQVAKLAHANPLTVLRTIVHQIEAYK
DMIAPVVDAFKYLTQLEYDVLEYVVLERLAQGGREKLKEDGLNLSDWLQSLASFWGTLCK
KHPSMELRGLFQYLVNQLKKGDGIELVVLQELMQQMANVEYTENVTEDQLEAMSGGETLR
YQATAFGLVRNNKAFTKSTNRLRDALLSKEEPKLALPLVLLIAQHRSNIVTKCNAPHIKM
VSEQFDRCHGALLQYVEFLYVAVTPSTAYAQLMPSLDELVHKYLIEPEVAFLIYRPVLGL
FKTPKGSDTSGQIDESQSSKDLVLELPHRKAITWTDLLSTVHTMLPLKAWNSLSPELYLT
FWGLSLHDLYVPRQRYELEIAKQRSSLRALEESSDNSYAAITKRKKDKEKIQEVLDRLSS
ELQKQEQHVATVQQRLLREKDSWLTSCPDSQKINMEFLQRCIFPRCVFSTIDAVYCARFV
QNLHSLGTPFFNTVNHIDCLICKTLQPMIYCCTEYEAGRLGRFLFETLKMAYHWKSDESV
YDRECGNMPGFAVLYRDPNSQRVTFAQFVRVSIFFLNEMLTPDFQVNKIKLDDREDLKVL
ATGVSAALASRKNAWMSDEEFGMGYIDLKPPPVPAKAAPSLTEPQQQPTPGVASMPVRSD
GKAAASRPAVPAASTELKQASQTKSRKPSSEPANGIDARSTEVHHSKQVAEEEVSNFKPE
QVRDDPPSKTPKVDTSSNAASVEKEAGAFDNSRRMSSSSHTNAGASSTRSPVVTSSRPGA
QDLPPKPRIETTSRSAEPKASIERERDRQDAHEGAMSNHMAASSKSPSHRDDGAHFLDKD
RQIKRAGSNDESERKRRKAEPVERNVEAGEIRTGERWLASERPRSAEHGGYDDRPSLEKG
RERPDRDYRMERSDRDDYGDKLSRDRLVPRDRSVDRNSDRAGDWNFDSRSRDERSNKDER
PRPRHTDSAGEQSHGDDRFSQGLPPPPPLPPNMVPHLLSSAPGSRREEEVERRRAMQRLS
PHRDEKRRADEGGMMLMDEKRRRDEDNRERKRDERELLAIKVRMEKEREREREKMAMAKD
ELDGAAGSKRRKLKRDHISGEGFLPPPPPPPPPAAASQQQYERKAVVPQQARNVYMEPPL
KDVPSKLTRRDHEQMYDREWEEEKRQRAELKRRHHRK
NT seq
5154 nt
NT seq
+upstream
nt +downstream
nt
atggctctaatagcgctgaattgcaagtacgtgacgagcgagcacatccgggaatggaag
tcgacgaatgccgcgactaagattcacgctgctgttcctccggatcgatttatctacgag
ctctgctggacgatggtccgaggagagctgccacttagtaaatgccgagtaggcctcgat
gctgtgaattttctggagtcgactcttaaggaagatatcgcttccaattttgccgatgct
attgctcacatgagcttagagctcactgtacctggggaatttcgatcgcggcttgtcgac
cttgcgaaatggcttgcggaatctggtttggtccctgttcgtctcttccaagagcgctgt
gaggctgagttcttatgggaggtggaaatgatcaagatcaaagctccggatttgaagtcg
aaggaggttagagtgaatacacgactgttataccaacagacgaagttcaatctgttgcgg
gaggagagtgaaggatatgcaaagctggtaatactatactgctgttgctttggaagtgat
agttctcagagcagttctgctgtcgccagctctatcaagtctcttatcgggcacttcgac
ctcgatcccaatagagtttttgacattgttttggagttttttgaattacatcctgagaac
acttcctttattggcttgatgccactttttcgaaagtctcatctttgtcatattcttggt
tttaagttccaatactatcaacgtccggagattgaagaaccagtgccaactggtctttat
agattggctgcgactctagtgaaggctgactttgttgacctggatagcatatatgctcat
ttaacacctaaagatgaagaagcttttgaacagtacgaggaaattcttaagaggcgcatg
gaggaggcgaacagaataggaaagataaatcttgcggcgactggaaaagatctcatggag
gaagagaaacccggagacgtaaacattgacctttatgccgcattagatggcgaggttgaa
gcaacagctgagcgggtaatggagcttgtaacgaatcaaaagctggggctgcttgatggg
tttctgacagtcggcgattggcatcacgcaaacatcctgttcgagcgtctagctgctctt
aatccggttgcgcacgagcgaatatcgagcgggctgataaggattatagaaaacactatt
gcaccaatctacaatcgtcttcgaccttcgtacttttcaaagttgaaccaagaggtttct
acccgaaaagctcctgtgacggagcttaggaaggaactctttcaaatgctttcttggatt
ggtccatacctatatcgagatgtaattcttttacagaaggtttgtaaggttcttagagga
tattattcttcggctgtgtctgctgttaactctacgcgctctcaagaagctgagcacaaa
gatgctagggcagctctcaaggaagcacgtctgaaggttgaggaagcattaagcgcttgc
ttacttccatcattacagcttttaccagctaatccagctgtctgcattgccatatgggac
gttctgagtttactttcgtatgaggtccgataccgaatatatggtgaatgggaaaaagat
gacgaatcattcccaatgcttttggctgctcgtcagactgctaagctggacacaagacgc
atattaaagaggcttgccaaggaaaatttgaagcaactgggacgacaggttgccaagctt
gcccacgcaaatccgttaactgtccttagaaccattgtccatcagattgaagcatacaaa
gatatgattgctcctgtagttgacgcttttaagtacctcactcagctcgagtatgacgtc
ctagaatacgtggtgttggagcgcctagctcaaggcggccgcgagaagcttaaggaggat
ggattaaatctctcagattggcttcaatctctggcatctttctggggtactttatgcaaa
aagcatccttcaatggaactacgtggcctgtttcagtaccttgtcaatcagctaaagaag
ggtgatggcatagaacttgttgtactacaggaattgatgcaacaaatggccaacgtagaa
tacactgaaaatgttactgaagatcaactggaagccatgtccggcggcgagaccttacgg
tatcaagctacagcatttgggttggttaggaacaataaggcgtttactaaatccactaat
aggctgcgggacgccctactttccaaggaagagcccaaactggcacttccgttggtactg
ctcattgctcaacacagatctaatatcgtaacgaaatgcaatgcaccacatattaaaatg
gtcagcgagcagttcgatagatgtcacggcgcgctcttgcagtacgtggaatttctgtat
gttgctgtgactccgtccacggcttatgctcaactcatgccatcgcttgatgaacttgta
cacaagtatcttatagaaccggaggtggctttcctcatttatagaccggtcttgggactc
tttaaaacgccaaaagggtcagatacaagtgggcagattgatgaaagccaatcttctaag
gatctggtactggagttgccacatcgaaaagcaataacgtggactgatcttctttcgact
gtccatactatgctacctctgaaagcctggaacagcctctcgccggaactttacctcaca
ttttggggtctatcgttgcacgatctatacgttcctagacaacgttacgaacttgagatt
gcaaagcaacggtcttccttgagagcgttggaggagagctctgacaactcttatgctgca
atcacaaagcggaagaaagataaggagaaaatacaggaagtccttgacagattgtcatca
gagttgcagaagcaagagcaacacgtggctactgttcagcaacgtcttttacgtgagaag
gattcttggctgacctcatgcccggatagccaaaagattaacatggagttcttgcaacgc
tgcatttttccaagatgcgtattcagcacgatcgatgctgtttactgtgctaggtttgtt
caaaaccttcactcgcttggtactccattcttcaacactgtcaaccacatcgactgcctc
atatgtaaaacgctgcaaccaatgatttactgttgtacggaatatgaagcgggaaggctg
ggcaggttcttgtttgagacgttgaaaatggcatatcactggaagagcgatgaatcggtt
tatgatcgagaatgtggaaatatgcctggttttgctgttctgtacagagatccgaacagt
caacgggtaactttcgcacagtttgttcgggtaagcattttctttttgaatgaaatgcta
accccggattttcaggttaacaaaattaaattggatgaccgtgaagatcttaaagttctt
gctacgggagtgtctgctgctctggctagtcgcaagaatgcatggatgagtgacgaggag
ttcggaatgggttacattgaccttaaaccccctcctgtccccgcaaaagcagcaccatcc
ttgactgagccgcaacaacagcctactcctggcgttgcttcgatgccagtgagatcagat
gggaaagcagcagcttccaggccagctgttccagcagcttcaacggagttaaagcaagct
agtcagaccaaaagccgtaaaccctcaagcgaaccagcaaatggtatagatgctcgaagc
acagaggtgcatcattccaaacaagttgccgaagaagaggtgagtaacttcaagccggaa
caggtgcgagacgatccgccaagtaagacgccaaaggtggatacaagctccaatgccgca
agtgtagagaaggaggcgggtgcattcgataacagcagacgtatgagcagcagttctcac
acgaatgcgggtgcttcatccactcggtcaccggttgtcacatcatctcgaccaggagct
caggacttaccacccaagccacggattgaaacaacctccaggtctgcggaaccgaaggct
tcgattgaaagggagagggacaggcaggatgctcacgaaggagcaatgagcaatcacatg
gcagcgtcatcaaaatcaccttcgcaccgggacgatggtgcgcacttccttgacaaagat
aggcagatcaaacgagcaggcagtaacgacgagtccgaacgaaagcgaaggaaagcagag
cccgttgagagaaatgtggaggctggtgagattcgtacaggagaaaggtggctagcttct
gaaagaccccggtctgcggagcacgggggatacgacgaccgtcccagccttgagaagggg
cgagagagaccagaccgagattacaggatggagaggtccgaccgagatgactatggcgat
aagttgtcgagggatagattagtgccgagggacaggtcagtagatagaaattcggataga
gcaggcgattggaattttgacagtagaagcagggacgagagaagcaacaaggacgagcgg
cccaggccgagacacactgactctgctggagaacagtcacatggtgacgaccggttttca
cagggcttgcctcctccgccacctctcccgcccaacatggtaccgcatttgctatcgtcg
gctccaggaagtagacgagaggaagaagtcgagaggaggagagccatgcagcgtttatct
cctcacagggacgagaagcgcagagcggatgaaggcggtatgatgctcatggatgagaag
cggaggagggatgaagataacagggagcggaagcgagacgagagagaacttctagcgatc
aaggtaagaatggagaaagaacgtgagcgcgaaagagagaagatggcgatggccaaagac
gaacttgacggggctgctggatccaagcgcaggaaactcaagcgggatcacatctctgga
gagggattcttaccgccgccgccaccgccgccaccccccgcggcagcgtcgcagcagcag
tacgagagaaaggctgtggtaccacagcaggccaggaacgtttacatggagccacctctt
aaagacgttccttccaagcttactcgccgcgaccacgaacagatgtatgatcgagagtgg
gaggaagaaaagaggcagcgcgcagagctcaagagaagacaccatagaaagtaa
DBGET
integrated database retrieval system
