Selaginella moellendorffii: SELMODRAFT_175123
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Entry
SELMODRAFT_175123 CDS
T01496
Name
(RefSeq) hypothetical protein
KO
K12879
THO complex subunit 2
Organism
smo
Selaginella moellendorffii
Pathway
smo03013
Nucleocytoplasmic transport
smo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
smo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
SELMODRAFT_175123
09122 Translation
03013 Nucleocytoplasmic transport
SELMODRAFT_175123
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smo03019
]
SELMODRAFT_175123
03041 Spliceosome [BR:
smo03041
]
SELMODRAFT_175123
Messenger RNA biogenesis [BR:
smo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
SELMODRAFT_175123
Spliceosome [BR:
smo03041
]
Complex C
Other components
EJC/TREX
SELMODRAFT_175123
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
SELMODRAFT_175123
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tho2
THOC2_N
Thoc2
ABPF_N
Motif
Other DBs
NCBI-GeneID:
9645468
NCBI-ProteinID:
XP_002975794
JGI:
175123
UniProt:
D8RXE2
LinkDB
All DBs
Position
Unknown
AA seq
1719 aa
AA seq
DB search
MALIALNCKYVTSEHIREWKSTNAATKIHAAVPPDRFIYELCWTMVRGDLPLSKCRVGLD
AVNFLESTLKEDIASNFADAIAHMSLELTVPGEFRSRLVDLAKWLAESGLVPVRLFQERC
EAEFLWEVEMIKIKAPDLKSKEVRVNTRLLYQQTKFNLLREESEGYAKLVILYCCCFGSD
SSQSSSAVASSIKSLIGHFDLDPNRVFDIVLEFFELHPENTSFIGLMPLFRKSHLCHILG
FKFQYYQRPEIEEPVPTGLYRLAATLVKADFVDLDSIYAHLTPKDEEAFEQYEEILKRRM
EEANRIGKINLAATGKDLMEEEKPGDVNIDLYAALDGEVEATAERVMELVTNQKLGLLDG
FLTVDDWHHANILFERLAALNPVAHERISSGLIRIIENTIAPIYNRLRPSYFSKLNQEVS
TRKAPVTELRKELFQMLSWIGPYLYRDVILLQKVCKVLRGYYSSAVSAVNSTRSQEAEHK
DARAALKEARLKVEEALSACLLPSLQLLPANPAVCIAIWDVLSLLSYEVRYRIYGEWEKD
DESFPMLLAARQTAKLDTRRILKRLAKENLKQLGRQVAKLAHANPLTVLRTIVHQIEAYK
DMIAPVVDAFKYLTQLEYDVLEYVVLERLAQGGREKLKEDGLNLSDWLQSLASFWGTLCK
KHPSMELRGLFQYLVNQLKKGDGIELVVLQELMQQMANVEYTENVTEDQLEAMSGGETLR
YQATAFGLVRNNKAFTKSTNRLRDALLSKEEPKLALPLVLLIAQHRSNIVTKCNAPHIKM
VSEQFDRCHGALLQYVEFLYVAVTPSTAYAQLMPSLDELVHKYLIEPEVAFLIYRPVLGL
FKTPKGSDTSGQIDESQSSKDLVLELPHRKAITWTDLLSTVHTMLPLKAWNSLSPELYLT
FWGLSLHDLYVPRQRYELEIAKQRSSLRALEESSDNSYAAITKRKKDKEKIQEVLDRLSS
ELQKQEQHVATVQQRLLREKDSWLTSCPDSQKINMEFLQRCIFPRCVFSTIDAVYCARFV
QNLHSLGTPFFNTVNHIDCLICKTLQPMIYCCTEYEAGRLGRFLFETLKMAYHWKSDESV
YDRECGNMPGFAVLYRDPNSQRVTFAQFVRVSIFFLKTSEMLTPDFQVNKIKLDDREDLK
VLATGVSAALASRKNAWMSDEEFGMGYIDLKPPPVPAKAAPSLTEPQQQPTPGVASMPVR
SDGKAAASRPAVPAASTELKQASQTKSRKPSSEPANGIDARSTEVHHSKQVAEEEVSNFK
PEQVRDDPPSKTPKVDTSSNAATVEKEAGAFDTSRRMSSSSHTNAGASSTRSPVVTSSRP
GAQDLPPKPRIETTSRSAEPKASIERERDRQDAHEGAMSNHMAASSKSPSHRDDGAHFLD
KDRQIKRAGSNDESERKRRKAEPVERNVEAGEIRTGERWLASERPRSAEHGGYDDRPSLE
KGRERPDRDYRMERSDRDDYGDKLSRDRLVPRDRSVDRSSDRAGDWNFDTRSRDERSNKD
ERPRPRHTDSAGEQSHGDDRFSQGLPPPPPLPPNMVPHLLSSAPGSRREEEVERRRAMQR
LSPHRDEKRRADEGGMMLMDEKRRRDEDNRERKRDERELLAIKVRMEKEREREREKMAMA
KDELDGAAGSKRRKLKRDHISGEGFLPPPPPPPPPAAASQQQYERKAVVPQQARNVYMEP
PLKDVPSKLTRRDHEQMYDREWEEEKRQRAELKRRHHRK
NT seq
5160 nt
NT seq
+upstream
nt +downstream
nt
atggctctaatcgcgctgaattgcaagtacgtgacgagcgagcacatccgggaatggaag
tcgacgaatgccgcgactaagattcacgctgctgttcctccggatcgatttatctacgag
ctctgctggacgatggtccgaggagacctgccacttagtaaatgccgagtaggcctcgat
gctgtgaattttctggagtcgactcttaaggaagatatcgcttccaattttgccgatgct
attgctcacatgagcttagagctcactgtacctggggaatttcgatcgcggcttgtcgac
cttgcgaaatggcttgcggaatctggtttggtccctgttcgtctcttccaagagcgctgt
gaggctgagttcttgtgggaggtggaaatgatcaagatcaaagctccggatttgaagtcg
aaggaggttagagtgaatacacgactgttataccaacagacgaagttcaatctgttgcgg
gaggagagtgaaggatatgcaaagctggtaatactatactgctgttgctttggaagtgat
agttctcagagcagttctgctgtcgccagctctatcaagtctcttatcgggcacttcgac
ctcgatcccaatagagtttttgacattgttttggagttttttgaattacatcctgagaac
acttcctttattggcttgatgccactttttcgaaagtctcatctttgtcatattcttggt
tttaagtttcaatactatcaacgtcctgagattgaagaaccagtgccaactggtctttat
agattggctgcgactctagtgaaggctgactttgttgacctggatagcatatatgctcat
ttaacacctaaagatgaagaagcttttgaacagtacgaggaaattcttaagaggcgcatg
gaggaggcgaacagaataggaaagataaatcttgcggcgactggaaaagatctcatggag
gaagagaaacccggagacgtaaacattgacctttatgccgcattagatggcgaggttgaa
gcaacagctgagcgggtaatggagcttgtaacgaatcaaaagctggggctgcttgatggg
tttctgacagtcgacgattggcatcacgcaaacatcctgttcgagcgtctagctgctctt
aatccggttgcgcacgagcgaatatcgagcgggttgataaggattatagaaaacactatt
gcaccaatctacaatcgtcttcgaccttcgtacttttcaaagttgaaccaagaggtttct
acccgaaaagctcctgtgacggagcttaggaaggaactctttcaaatgctttcttggatt
ggtccatacctatatcgagatgtaattcttttacagaaggtttgtaaggttcttagagga
tattattcttcggctgtgtctgctgttaattctacgcgctctcaagaagctgagcacaaa
gatgctagggcagctctcaaggaagcacgtctgaaggttgaggaagcattaagcgcttgc
ttacttccatcattacagcttttaccagctaatccagctgtctgcattgccatatgggac
gttctgagtttactttcgtatgaggtccgataccgaatatatggtgaatgggaaaaagat
gacgaatcattcccaatgcttttggctgctcgtcagactgctaagctggacacaagacgc
atattaaaaaggcttgccaaggaaaatttgaagcaactgggacgacaggttgccaagctt
gcccacgcaaatccgttaactgtccttagaaccattgtccatcagattgaagcatacaaa
gatatgattgctcctgtagttgacgcttttaagtacctcactcagctcgagtatgacgtc
ctagaatacgtggtgttggagcgcctagctcaaggcggccgcgagaagcttaaggaggat
ggattaaatctctcagattggcttcaatctctggcatctttctggggtactttatgcaaa
aagcatccttcaatggaactacgtggcctgtttcagtaccttgtcaatcagctaaagaag
ggtgatggcatagaacttgttgtactacaggaattgatgcaacaaatggccaacgtagaa
tacactgaaaatgttactgaagatcaactggaagccatgtccggcggcgagaccttacgg
tatcaagctacagcatttgggttggttaggaacaataaggcgtttactaaatccactaat
aggctgcgggacgccctactttccaaggaagagcccaaactagcacttccgttggtactg
ctcattgctcaacacagatctaatatcgtaacgaaatgcaatgcaccacatattaaaatg
gtcagcgagcagttcgatagatgtcacggcgcgctcttgcagtacgtggaatttctgtat
gttgctgtgactccgtccacggcttatgctcaactcatgccatcgcttgatgaacttgta
cacaagtatcttatagaaccggaggtggctttcctcatttatagaccggtcttgggactc
tttaaaacgccaaaagggtcagatacaagtgggcagattgatgaaagccaatcttctaag
gatctggtactggagttgccacatcgaaaagcaataacgtggactgatcttctttcgact
gtccatactatgctacctctgaaagcctggaacagcctctcgccggaactttacctcaca
ttttggggtctatcgttgcacgatctatacgttcctagacaacgttacgaacttgagatt
gcaaagcaacggtcttcgttgagagcgttggaggagagctctgacaactcttatgctgca
atcacaaagcggaagaaagataaggagaaaatacaggaagtccttgacagattgtcatca
gagttgcagaagcaagagcaacacgtggctactgttcagcaacgtcttttacgtgagaag
gattcttggctgacctcatgcccggatagccaaaagatcaacatggagttcttgcaacgc
tgcatttttccaagatgcgtattcagcacgatcgatgctgtttactgtgctaggtttgtt
caaaaccttcactcgcttggtactccattcttcaacactgtcaaccacatcgactgtctc
atatgtaaaacgctgcaaccaatgatttactgttgtacggagtatgaagcgggaaggctg
ggcaggttcttgtttgagacgttgaaaatggcatatcactggaagagcgatgaatcagtt
tatgatcgagaatgtggaaatatgcctggttttgctgttctgtacagagatccgaacagt
caacgggtaactttcgcacagtttgttcgggtaagcattttctttttgaagactagtgaa
atgctaaccccggattttcaggttaacaaaattaaattggatgaccgtgaagatcttaaa
gttcttgctacgggagtgtctgctgctctggctagtcgcaagaatgcatggatgagtgac
gaggagttcggaatgggttacattgaccttaaaccccctcctgtccccgcaaaagcagca
ccatccttgactgagccgcaacaacagcctactcctggcgttgcttcgatgccagtgaga
tcagatgggaaagcagcagcttccaggccagctgttccagcagcttcaacggagttaaag
caagctagtcagaccaaaagccgtaaaccctcaagcgaaccagcaaatggtatagatgct
cgaagcacagaggtgcatcattccaaacaagttgccgaagaagaggtgagtaacttcaag
ccggaacaggtgcgagacgatccgccaagtaagacgccaaaggtggatacaagctccaat
gccgcaactgtagagaaggaagcgggtgcattcgataccagcagacgtatgagcagcagt
tctcacacgaatgcgggtgcttcatccactcggtcaccggttgtcacatcatctcgacca
ggagctcaggacttaccacccaagccacggattgaaacaacctccaggtctgcggaaccg
aaggcttcgattgaaagggagagggacaggcaggatgctcacgaaggagcaatgagcaat
cacatggcagcgtcatcaaaatcaccttcgcaccgggacgatggtgcgcacttccttgac
aaagataggcagatcaaacgagcaggcagtaacgacgagtccgaacgaaagcgaaggaaa
gcagagcccgttgagagaaatgtggaggctggtgagattcgtacaggagaaaggtggcta
gcttctgaaagaccccggtctgcggagcacgggggatacgacgaccgtcccagccttgag
aaggggcgagagagaccagaccgagattacaggatggagaggtccgaccgagatgactat
ggcgataagttgtcgagggatagattagtgcccagggacaggtcagtagatagaagttcg
gatagagcaggcgattggaattttgacactagaagcagggacgagagaagcaacaaggac
gagcggcccaggcccagacacactgactctgctggagaacagtcacatggtgacgaccgg
ttttcacagggcttgcctcctccgccacctctcccgcccaacatggtaccgcatttgcta
tcgtcggctccaggaagtagacgagaggaagaagtcgagaggaggagagccatgcagcgt
ttatctcctcacagggacgagaagcgcagagcggatgaaggcggtatgatgctcatggat
gagaagcggaggagggatgaagataacagggagcggaagcgagacgagagagaacttcta
gcgatcaaggtaagaatggagaaagaacgtgagcgcgaaagagagaagatggcgatggca
aaagacgagcttgacggggctgctggatccaagcgcaggaaactcaagcgggatcacatc
tctggagagggattcttaccgccgcctccaccgccgccaccccccgcggcagcgtcgcag
cagcagtacgagagaaaggctgtggtaccacaacaggccaggaacgtttacatggagcca
cctctcaaagacgttccttccaagcttactcgccgcgaccacgaacagatgtatgatcga
gagtgggaggaagaaaagaggcagcgcgcagagctcaagagaagacaccatagaaagtaa
DBGET
integrated database retrieval system
