Selaginella moellendorffii: SELMODRAFT_175887
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Entry
SELMODRAFT_175887 CDS
T01496
Name
(RefSeq) hypothetical protein
KO
K07573
exosome complex component CSL4
Organism
smo
Selaginella moellendorffii
Pathway
smo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SELMODRAFT_175887
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smo03019
]
SELMODRAFT_175887
Messenger RNA biogenesis [BR:
smo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
SELMODRAFT_175887
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
SELMODRAFT_175887
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EXOSC1
ECR1_N
RRP4_S1
ECR1_N_2
S1
Motif
Other DBs
NCBI-GeneID:
9649948
NCBI-ProteinID:
XP_002976955
JGI:
175887
UniProt:
D8S0J7
LinkDB
All DBs
Position
Unknown
AA seq
197 aa
AA seq
DB search
MAKREDDLRTPGELLGLASEFNAGRGSYCHDGKIYASLVGIRHLIEAKQGSDDLRPTIEI
RREKERDAVPEAGSTVTAKITKVQARMASADIVCVGPRAVKEKFTGIVRQQDVRLTEIDK
VDMHSSFRPGDIIRAEVISLGDSRAYYLSTAKNELGVVSAVSVAGATMVAVSWQEMQCPL
TNQREPRKVAKVVTSNE
NT seq
594 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagcgggaagacgatctccggacgccgggcgagctgcttggcctggcgtccgaa
ttcaatgccggcagaggctcctactgccacgacggtaagatttacgcctcgctcgtcggg
atccggcatttgatcgaggcgaaacaaggctcggatgatctgaggcctacgatcgagatt
cgcagggagaaggagagggacgcagtgccagaagctggatcgacagtcactgccaagatc
acgaaagtccaggcacgaatggcttcggctgatatcgtttgcgtcgggccaagggccgtg
aaggagaaattcacgggcatagtcagacaacaggatgtaaggctcactgagatcgacaaa
gtagacatgcattcttcgttccggcctggagacatcattcgagcggaagtgatctcgctc
ggagactctcgcgcttactatctttccactgcaaagaacgaacttggcgtcgtttcggct
gtgagcgtcgctggtgctacaatggttgccgtaagctggcaagaaatgcaatgtccttta
acgaaccaaagagaaccacgtaaggtcgcgaaggtggtcacttcaaacgagtga
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