KEGG   Selaginella moellendorffii: SELMODRAFT_175887
Entry
SELMODRAFT_175887 CDS       T01496                                 
Name
(RefSeq) hypothetical protein
  KO
K07573  exosome complex component CSL4
Organism
smo  Selaginella moellendorffii
Pathway
smo03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:smo00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    SELMODRAFT_175887
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:smo03019]
    SELMODRAFT_175887
Messenger RNA biogenesis [BR:smo03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     SELMODRAFT_175887
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     SELMODRAFT_175887
SSDB
Motif
Pfam: EXOSC1 ECR1_N RRP4_S1 ECR1_N_2 S1
Other DBs
NCBI-GeneID: 9649948
NCBI-ProteinID: XP_002976955
JGI: 175887
UniProt: D8S0J7
LinkDB
Position
Unknown
AA seq 197 aa
MAKREDDLRTPGELLGLASEFNAGRGSYCHDGKIYASLVGIRHLIEAKQGSDDLRPTIEI
RREKERDAVPEAGSTVTAKITKVQARMASADIVCVGPRAVKEKFTGIVRQQDVRLTEIDK
VDMHSSFRPGDIIRAEVISLGDSRAYYLSTAKNELGVVSAVSVAGATMVAVSWQEMQCPL
TNQREPRKVAKVVTSNE
NT seq 594 nt   +upstreamnt  +downstreamnt
atggcgaagcgggaagacgatctccggacgccgggcgagctgcttggcctggcgtccgaa
ttcaatgccggcagaggctcctactgccacgacggtaagatttacgcctcgctcgtcggg
atccggcatttgatcgaggcgaaacaaggctcggatgatctgaggcctacgatcgagatt
cgcagggagaaggagagggacgcagtgccagaagctggatcgacagtcactgccaagatc
acgaaagtccaggcacgaatggcttcggctgatatcgtttgcgtcgggccaagggccgtg
aaggagaaattcacgggcatagtcagacaacaggatgtaaggctcactgagatcgacaaa
gtagacatgcattcttcgttccggcctggagacatcattcgagcggaagtgatctcgctc
ggagactctcgcgcttactatctttccactgcaaagaacgaacttggcgtcgtttcggct
gtgagcgtcgctggtgctacaatggttgccgtaagctggcaagaaatgcaatgtccttta
acgaaccaaagagaaccacgtaaggtcgcgaaggtggtcacttcaaacgagtga

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