Selaginella moellendorffii: SELMODRAFT_176463
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Entry
SELMODRAFT_176463 CDS
T01496
Name
(RefSeq) hypothetical protein
KO
K12586
exosome complex component RRP43
Organism
smo
Selaginella moellendorffii
Pathway
smo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SELMODRAFT_176463
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smo03019
]
SELMODRAFT_176463
Messenger RNA biogenesis [BR:
smo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
SELMODRAFT_176463
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
9657199
NCBI-ProteinID:
XP_002977693
JGI:
176463
UniProt:
D8S327
LinkDB
All DBs
Position
Unknown
AA seq
291 aa
AA seq
DB search
MADDVEVDAFKRLYPAQFLERYLDASVRPDGRPLTRSRPTSVSFNAVSSADGSALVKIGN
TTMLAGAKLETMEPAADTPDQGCLSVDFVMPPICSPRVRPGRPAEEAYVITEQLQNALLS
SGVVDLRELSIVSGKAAWMIYLDVYCLDADGSLLDAALLASVAALAHLQVPAICVRSEGK
ITKAPPDAQASSDGIEFTQPRRLNLGEFPFALTVAMNQKSLIADPTAEEEAILDTKMIVI
LNSSQKIIALHKAGGSTTASTATIQDCLALAMRRRKTLQKVLEEALRKSTK
NT seq
876 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgatgtcgaggtggatgcgttcaagcgcctgtatcccgcgcagtttctcgag
cgctacctggatgcatcggtgcggccggatgggaggccgctcacgcgatcgcgcccgacg
tcggtgtcgttcaacgctgtgtcgtcggcggacggatcggcgcttgtcaagattggaaac
acgacaatgctggctggagcgaagctagagacgatggagccggctgctgatacacccgat
caaggctgcctgtctgtagatttcgtaatgccaccgatttgctcgcctcgagtgaggcca
ggaaggccagcagaggaggcatatgtcataacggagcagctgcaaaatgccctcttgagc
tccggtgttgtcgatttacgtgagctctcgatcgtcagtggtaaagccgcttggatgatc
tatctggacgtttattgcttagacgccgatggatcacttcttgacgcagcactgctcgcg
tcagtagctgctctagcgcatttacaggtacccgcgatctgtgtaagaagtgagggaaag
atcacgaaggctcctccagatgcccaagcaagctccgatgggatcgagtttactcaaccg
cgacgcctcaacctcggtgaatttccattcgcgctgacagtagccatgaaccaaaagtcc
ttgatcgcggatcccacagccgaggaggaagccattttagacactaagatgatcgtgatc
ctcaactcttcccagaaaatcatcgctctccacaaggctggtggatcgaccactgcttct
acagcaacaatccaggattgtcttgcgctcgcgatgagaagaagaaaaacactgcaaaaa
gttttggaagaggctctccgaaagagcaccaaatag
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