KEGG   Selaginella moellendorffii: SELMODRAFT_176463
Entry
SELMODRAFT_176463 CDS       T01496                                 
Name
(RefSeq) hypothetical protein
  KO
K12586  exosome complex component RRP43
Organism
smo  Selaginella moellendorffii
Pathway
smo03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:smo00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    SELMODRAFT_176463
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:smo03019]
    SELMODRAFT_176463
Messenger RNA biogenesis [BR:smo03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     SELMODRAFT_176463
SSDB
Motif
Pfam: RNase_PH RNase_PH_C
Other DBs
NCBI-GeneID: 9657199
NCBI-ProteinID: XP_002977693
JGI: 176463
UniProt: D8S327
LinkDB
Position
Unknown
AA seq 291 aa
MADDVEVDAFKRLYPAQFLERYLDASVRPDGRPLTRSRPTSVSFNAVSSADGSALVKIGN
TTMLAGAKLETMEPAADTPDQGCLSVDFVMPPICSPRVRPGRPAEEAYVITEQLQNALLS
SGVVDLRELSIVSGKAAWMIYLDVYCLDADGSLLDAALLASVAALAHLQVPAICVRSEGK
ITKAPPDAQASSDGIEFTQPRRLNLGEFPFALTVAMNQKSLIADPTAEEEAILDTKMIVI
LNSSQKIIALHKAGGSTTASTATIQDCLALAMRRRKTLQKVLEEALRKSTK
NT seq 876 nt   +upstreamnt  +downstreamnt
atggcggacgatgtcgaggtggatgcgttcaagcgcctgtatcccgcgcagtttctcgag
cgctacctggatgcatcggtgcggccggatgggaggccgctcacgcgatcgcgcccgacg
tcggtgtcgttcaacgctgtgtcgtcggcggacggatcggcgcttgtcaagattggaaac
acgacaatgctggctggagcgaagctagagacgatggagccggctgctgatacacccgat
caaggctgcctgtctgtagatttcgtaatgccaccgatttgctcgcctcgagtgaggcca
ggaaggccagcagaggaggcatatgtcataacggagcagctgcaaaatgccctcttgagc
tccggtgttgtcgatttacgtgagctctcgatcgtcagtggtaaagccgcttggatgatc
tatctggacgtttattgcttagacgccgatggatcacttcttgacgcagcactgctcgcg
tcagtagctgctctagcgcatttacaggtacccgcgatctgtgtaagaagtgagggaaag
atcacgaaggctcctccagatgcccaagcaagctccgatgggatcgagtttactcaaccg
cgacgcctcaacctcggtgaatttccattcgcgctgacagtagccatgaaccaaaagtcc
ttgatcgcggatcccacagccgaggaggaagccattttagacactaagatgatcgtgatc
ctcaactcttcccagaaaatcatcgctctccacaaggctggtggatcgaccactgcttct
acagcaacaatccaggattgtcttgcgctcgcgatgagaagaagaaaaacactgcaaaaa
gttttggaagaggctctccgaaagagcaccaaatag

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