KEGG   Selaginella moellendorffii: SELMODRAFT_179772
Entry
SELMODRAFT_179772 CDS       T01496                                 
Name
(RefSeq) hypothetical protein
  KO
K12880  THO complex subunit 3
Organism
smo  Selaginella moellendorffii
Pathway
smo03013  Nucleocytoplasmic transport
smo03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:smo00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    SELMODRAFT_179772
  09122 Translation
   03013 Nucleocytoplasmic transport
    SELMODRAFT_179772
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:smo03019]
    SELMODRAFT_179772
   03041 Spliceosome [BR:smo03041]
    SELMODRAFT_179772
Messenger RNA biogenesis [BR:smo03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     SELMODRAFT_179772
Spliceosome [BR:smo03041]
 Complex C
  Other components
   EJC/TREX
    SELMODRAFT_179772
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    SELMODRAFT_179772
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_IFT122_1st Beta-prop_WDR5 WD40_Prp19 WD40 Beta-prop_WDR3_1st WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_EML_2 ANAPC4_WD40 EIF3I Beta-prop_WDR36-Utp21_2nd Beta-prop_CAF1B_HIR1 WDR55 Beta-prop_RIG_2nd Beta-prop_WDR3_2nd WD40_Gbeta Beta-prop_TEP1_2nd Beta-prop_Aladin Beta-prop_WDR19_1st Beta-prop_NOL10_N Beta-prop_TEP1_C Beta-prop_Vps41 Beta-prop_WDR36-Utp21_1st Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd Beta-prop_EML Beta-prop_WDR35_TULP_N Beta-prop_WDR75_1st Beta-prop_HPS5 CFAP251_N Beta-prop_IFT140_1st Beta-prop_EIPR1 NBCH_WD40 DSE1_N WDR90_beta-prop_4th TRM82_WD PAC11 Beta-prop_NUP159_NUP214 Beta-prop_IFT80_2nd Tricorn_2nd WD40_RFWD3 WD_LRWD1 Beta-prop_DCAF12 Beta-prop_Nup120_160 Beta-prop_RIC1_2nd Beta-prop_WDR41 Beta-prop_SCAP Beta-prop_WDR11_1st
Other DBs
NCBI-GeneID: 9661926
NCBI-ProteinID: XP_002982763
JGI: 179772
UniProt: D8SHI3
LinkDB
Position
Unknown
AA seq 355 aa
MASEQIQRSQQSQQPLQQPLAVVSSSGGSAPGSSSEKINFKALHVREFSGHKKKVHSVAW
NCTGKKLASGSIDQTARIWHVEPHGHSKNKDIELKGHSDSVDQLCWDPRHADLLATASGD
KTVRLWDARTGKCSQQVELSGENINITFKPDGTHIAVGNRDDELTIIDVRKFKPLQKRKF
AYEVNEIAWNSTGELFFLTTGNGTVEVLSYPSLQTLQTLIGHTAGCYCIAIDPTGRQVCC
SKFLYFAVGSADALVSLWDASEMLCVRTFTKLEWPVRTISISHDGQYLASASEDLFIGIA
EVETGRSVHQIPCRAAMNSVEWNPKYNLLAFAADKQVDKYQTDEGVFRIYGFESP
NT seq 1068 nt   +upstreamnt  +downstreamnt
atggcgagcgagcaaatccagcgctcccagcaatcgcagcagccactccagcagccgctg
gcggtcgtgagcagcagcggtgggagcgcgcctggctcttcttccgagaagatcaatttc
aaggcactgcacgtccgggagttctcgggccacaagaagaaggtacattctgtggcctgg
aattgcacgggaaagaagctcgcgtctggctccatcgatcagactgctcgcatttggcat
gtagaacctcacgggcatagtaagaacaaggatatcgaacttaaaggacacagtgatagc
gtcgatcagctgtgctgggaccccagacacgccgaccttcttgcgacagcgtccggggat
aagactgttcgtctctgggatgctcgcactgggaagtgttcacagcaagttgagttgagt
ggtgagaacatcaatatcactttcaaaccagatggaacacacattgctgtcggtaacagg
gacgacgagcttaccattattgatgttcgtaagttcaagcctctccaaaaacggaaattt
gcctatgaagtgaacgaaatagcttggaatagcactggtgagctcttcttcctgacaact
gggaatgggactgtcgaggttctatcgtatccatcgctgcaaacactccagacgctcatt
ggtcatacagccggctgctactgcatcgctatagatcctactggcaggcaggtttgctgc
tcgaaattcctatactttgcggttggaagcgcggacgctttggtgagcctgtgggatgcg
tccgaaatgctgtgtgttaggaccttcacaaaactcgaatggcctgtgaggacgataagc
ataagtcacgacggccagtaccttgcttccgcgagcgaagatctcttcattggaattgcg
gaggtggaaactggaagatcggtacaccagattccgtgccgcgcagccatgaacagcgtc
gagtggaatccaaagtacaatctcctggcatttgcagcggacaagcaagtcgacaagtac
caaaccgacgaaggtgtttttcgaatctatggctttgaaagtccctga

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