KEGG   Selaginella moellendorffii: SELMODRAFT_180179
Entry
SELMODRAFT_180179 CDS       T01496                                 
Name
(RefSeq) hypothetical protein
  KO
K03011  DNA-directed RNA polymerase II subunit RPB3
Organism
smo  Selaginella moellendorffii
Pathway
smo03020  RNA polymerase
smo03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:smo00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    SELMODRAFT_180179
  09124 Replication and repair
   03420 Nucleotide excision repair
    SELMODRAFT_180179
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:smo03021]
    SELMODRAFT_180179
   03400 DNA repair and recombination proteins [BR:smo03400]
    SELMODRAFT_180179
Transcription machinery [BR:smo03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Core subunits
     SELMODRAFT_180179
DNA repair and recombination proteins [BR:smo03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      SELMODRAFT_180179
SSDB
Motif
Pfam: RNA_pol_A_bac RNA_pol_L Acb1
Other DBs
NCBI-GeneID: 9654628
NCBI-ProteinID: XP_002983424
JGI: 180179
UniProt: D8SJA3
LinkDB
Position
Unknown
AA seq 320 aa
MEASYQRFPTVRIRDLKDDFLKFELRDTDASIANALRRVIIAEVPTLAIDLVEIEANSSV
LNDEFIAHRLGLIPLTSDKAMEMRYSRDCDECDGDGRCDYCSIEFTLSVKCTSEETLDVT
SHDLQSSDSQVVPVDSIGHDPDIENFNQKKGILIVKLRKGQELKLRAIARKGIAKDHAKW
SPAATVTFQYEPDIHINENLMETLSLEEKREWVDSSPTKVFEINPETQQVEVVDPEAYTY
DDEVIKKAEAMGKPGLVEIYGKEDSFIFTVESTGAIKAAQMFLNAIEILRSKLDAVKLNF
GSDEADEQFGDLGAHMRGGF
NT seq 963 nt   +upstreamnt  +downstreamnt
atggaggcttcgtatcagcgcttccccaccgtccggattcgcgacctcaaggatgatttc
ctcaagttcgagctgcgcgataccgacgccagcattgctaatgcgctgcgccgtgtgatc
attgccgaggttccgaccctggcgatcgacctggtggagattgaggcgaactcgtcggtc
ctcaatgacgagttcatcgcgcatcgtctaggtttgattcctctcaccagcgacaaggcc
atggagatgcgctactcgcgggactgcgacgaatgcgacggcgatggaaggtgtgactac
tgctcgatcgagttcacgctgtccgtgaaatgcacatccgaggaaacgctggatgttacc
agccatgatcttcaaagctcggattcacaagttgtgccagtggactcgattggacacgac
ccggacatcgaaaacttcaaccagaaaaagggcattctcattgtaaaactccggaaagga
caggagctcaagcttcgtgccattgccaggaaaggcattgccaaagatcatgccaaatgg
tcgccagcggcaaccgtgacgtttcagtatgagcctgacatccacatcaatgagaatctc
atggagacgctgagcctggaggagaaaagagaatgggtcgatagcagcccaaccaaagtc
tttgagatcaatccagagacacagcaggtggaagtggtcgacccagaggcatacacttat
gatgacgaagtgatcaagaaagcggaagccatgggaaagcctggccttgtggagatctat
ggcaaggaggacagcttcatcttcacagtggaatccaccggagcgatcaaggctgctcaa
atgttcctgaatgccattgagatcctccgcagcaagctcgatgcggtcaagctcaacttt
ggaagcgacgaggcagacgagcagtttggagatcttggagcacacatgcgtggcggcttc
taa

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