Selaginella moellendorffii: SELMODRAFT_180179
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Entry
SELMODRAFT_180179 CDS
T01496
Name
(RefSeq) hypothetical protein
KO
K03011
DNA-directed RNA polymerase II subunit RPB3
Organism
smo
Selaginella moellendorffii
Pathway
smo03020
RNA polymerase
smo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
smo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SELMODRAFT_180179
09124 Replication and repair
03420 Nucleotide excision repair
SELMODRAFT_180179
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
smo03021
]
SELMODRAFT_180179
03400 DNA repair and recombination proteins [BR:
smo03400
]
SELMODRAFT_180179
Transcription machinery [BR:
smo03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
SELMODRAFT_180179
DNA repair and recombination proteins [BR:
smo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
SELMODRAFT_180179
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
Acb1
Motif
Other DBs
NCBI-GeneID:
9654628
NCBI-ProteinID:
XP_002983424
JGI:
180179
UniProt:
D8SJA3
LinkDB
All DBs
Position
Unknown
AA seq
320 aa
AA seq
DB search
MEASYQRFPTVRIRDLKDDFLKFELRDTDASIANALRRVIIAEVPTLAIDLVEIEANSSV
LNDEFIAHRLGLIPLTSDKAMEMRYSRDCDECDGDGRCDYCSIEFTLSVKCTSEETLDVT
SHDLQSSDSQVVPVDSIGHDPDIENFNQKKGILIVKLRKGQELKLRAIARKGIAKDHAKW
SPAATVTFQYEPDIHINENLMETLSLEEKREWVDSSPTKVFEINPETQQVEVVDPEAYTY
DDEVIKKAEAMGKPGLVEIYGKEDSFIFTVESTGAIKAAQMFLNAIEILRSKLDAVKLNF
GSDEADEQFGDLGAHMRGGF
NT seq
963 nt
NT seq
+upstream
nt +downstream
nt
atggaggcttcgtatcagcgcttccccaccgtccggattcgcgacctcaaggatgatttc
ctcaagttcgagctgcgcgataccgacgccagcattgctaatgcgctgcgccgtgtgatc
attgccgaggttccgaccctggcgatcgacctggtggagattgaggcgaactcgtcggtc
ctcaatgacgagttcatcgcgcatcgtctaggtttgattcctctcaccagcgacaaggcc
atggagatgcgctactcgcgggactgcgacgaatgcgacggcgatggaaggtgtgactac
tgctcgatcgagttcacgctgtccgtgaaatgcacatccgaggaaacgctggatgttacc
agccatgatcttcaaagctcggattcacaagttgtgccagtggactcgattggacacgac
ccggacatcgaaaacttcaaccagaaaaagggcattctcattgtaaaactccggaaagga
caggagctcaagcttcgtgccattgccaggaaaggcattgccaaagatcatgccaaatgg
tcgccagcggcaaccgtgacgtttcagtatgagcctgacatccacatcaatgagaatctc
atggagacgctgagcctggaggagaaaagagaatgggtcgatagcagcccaaccaaagtc
tttgagatcaatccagagacacagcaggtggaagtggtcgacccagaggcatacacttat
gatgacgaagtgatcaagaaagcggaagccatgggaaagcctggccttgtggagatctat
ggcaaggaggacagcttcatcttcacagtggaatccaccggagcgatcaaggctgctcaa
atgttcctgaatgccattgagatcctccgcagcaagctcgatgcggtcaagctcaacttt
ggaagcgacgaggcagacgagcagtttggagatcttggagcacacatgcgtggcggcttc
taa
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