Selaginella moellendorffii: SELMODRAFT_180322
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Entry
SELMODRAFT_180322 CDS
T01496
Name
(RefSeq) hypothetical protein
KO
K02327
DNA polymerase delta subunit 1 [EC:
2.7.7.7
]
Organism
smo
Selaginella moellendorffii
Pathway
smo03030
DNA replication
smo03410
Base excision repair
smo03420
Nucleotide excision repair
smo03430
Mismatch repair
smo03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
smo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SELMODRAFT_180322
03410 Base excision repair
SELMODRAFT_180322
03420 Nucleotide excision repair
SELMODRAFT_180322
03430 Mismatch repair
SELMODRAFT_180322
03440 Homologous recombination
SELMODRAFT_180322
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
smo03032
]
SELMODRAFT_180322
03400 DNA repair and recombination proteins [BR:
smo03400
]
SELMODRAFT_180322
Enzymes [BR:
smo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
SELMODRAFT_180322
DNA replication proteins [BR:
smo03032
]
Eukaryotic type
DNA Replication Elongation Factors
DNA polymerase delta complex
SELMODRAFT_180322
DNA repair and recombination proteins [BR:
smo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
DNA polymerase delta complex
SELMODRAFT_180322
MMR (mismatch excision repair)
DNA polymerase delta complex
SELMODRAFT_180322
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol_B
DNA_pol_B_exo1
zf-C4pol
POL3_N
DNA_pol_B_2
REV3_N
divDNApol
Motif
Other DBs
NCBI-GeneID:
9651189
NCBI-ProteinID:
XP_002983728
JGI:
180322
UniProt:
D8SJU3
LinkDB
All DBs
Position
Unknown
AA seq
984 aa
AA seq
DB search
MPGRTGPAAILRMFGVTQQGNSVCCHIHGFEPYFYISCPDGWNPDDTSKFRHTLETRMRE
ANRNSKTPTFVPRVEMVQKRSLMYFQTQKARAFLKIVVALPTMVASCRGILEKGITLEGF
GHKCFITYESNILFALRFMIDCNVGGGNWIELPGGSYRLTPRRLSTCQIEIDILYNKIVS
HSATGQYSKLAPFRILSFDIECAGRKGHFPEPEHDPVIQIANLVTVQGESRPMVRNVMTL
KSCSAIVGVDVMSFDTEKEVLLAWRDLIREVDPDIIIGYNICKFDMPYLIERAQKLGIVE
FPVLGRIRNSRVRVRDATFSSRQYGIRESKEVLIEGRVQFDLLQAMQRDYKLSSYSLNSV
SAHFLGEQKEDVHHSIIADLQNGNSETRRRLAVYCLKDAYLPQRLLEKLMFIYNYIEMAR
VTGVPISFLLSRGQSIKVLSQILRKCRQRNFVVPNIKGQGAGQETFEGATVLEARAGFYE
KPIATLDFASLYPSIMMAYNLCYCTLVRTEDQARLNIAPENVNKTPSGEMFVKTNMEKGI
LPEILEELLAARKRARADLKEATDSLEKAVLDGRQLALKVSANSVYGFTGATVGQLPCLE
ISSSVTSYGRQMIEHTKTLVEGRFNTSNKYDNNAEVIYGDTDSVMVQFGVSTVEDAMNLG
REAADYISETFTKPIKLEFEKVYFPYLLISKKRYAGLLWTKPAKYDKMDTKGIETVRRDN
CLLVKNVVTQSLHKILVDRDVPGAVDFVKGMISDLLMNRMDLSLLVITKGLTKTGDDYAV
KAAHVELAERMRKRDAATAPNVGDRVPYVIIKAAKGAKAYERSEDPIYVLENNIPIDPQY
YLENQLSKPLLRIFEPILKNASKELLHGSHTRSVYITTPSNSGIMKFAKKQLTCLGCKAI
ISGGDTPLCKHCSGREAELYQRTVANVRDLEQLFGRLWTQCQRCQGSLHQDVLCTSRDCP
IFYRRKKAQKDLSEAELQEQRWDF
NT seq
2955 nt
NT seq
+upstream
nt +downstream
nt
atgccaggaagaactggccctgctgcaattttgaggatgtttggtgtcacgcagcaagga
aacagtgtttgctgtcatatacacgggtttgagccttacttttatatcagctgtcctgac
ggatggaatcctgatgacacgtctaagttccgccatactctcgagacaagaatgcgcgaa
gcaaacaggaatagcaagactcccacttttgttccaagagtagagatggtccagaagcga
agcttgatgtacttccaaacacagaaagcaagggcgttcctcaagattgttgttgcactt
ccaacaatggttgcttcctgtagaggaattcttgaaaaaggcatcactttggaaggcttt
ggtcataaatgcttcatcacatacgagagcaatattctctttgctcttcgattcatgatt
gattgcaacgtaggtggtggaaactggattgagcttcctggtggatcttatcgtttgact
ccacgccgactttcaacctgccaaattgagatcgatatactatacaacaagattgtcagt
catagtgctactggccagtactccaagcttgcaccttttcgtatattgagctttgacatc
gaatgtgctgggcggaaaggacattttccagagcccgaacatgatcccgttattcagatt
gcgaatcttgtgacagttcaaggggaaagtcgtcctatggttcgaaatgtgatgacgctc
aaatcttgttctgcgatagttggagtggacgttatgtccttcgatactgagaaagaggtc
ctcttggcatggcgggaccttatccgagaagttgaccctgacattattatcggctataac
atttgcaagttcgatatgccttacctgatcgagagggcacaaaagcttggaattgtggag
tttcctgttcttggacgtattcgcaacagccgagtccgtgttagagatgcgacattttct
tcaaggcaatatggtataagggaaagcaaggaagttttgatagaaggacgcgtacaattc
gatttgctacaggcaatgcaaagagattataagctcagctcatactccttaaactcggtg
tctgctcatttccttggagagcagaaagaggacgtccaccattccatcattgctgatttg
caaaatggtaactcggaaactcggaggcgtttggctgtttactgcttaaaagatgcgtat
ctgcctcagagattactcgaaaagctgatgtttatatataactatatcgaaatggcaaga
gtaacaggagttcccatttcgtttcttctttcgaggggacaaagtatcaaggtgctttca
caaattctaagaaaatgcagacaacgaaactttgtcgtgccaaacattaagggacaaggg
gctgggcaggaaacctttgaaggtgcaaccgttctagaagcaagggctggattttacgaa
aagccaattgccacgcttgattttgcatcactgtacccatcaattatgatggcttacaat
ctttgctattgcaccttggttagaacggaggatcaagccagattgaacatagcaccagaa
aatgttaacaaaacgccgtctggtgaaatgtttgtcaaaacaaatatggagaaagggatc
cttcctgaaatcttagaggaactgcttgctgccagaaagcgagccagagccgacctgaag
gaagctaccgattcacttgaaaaagccgtgttggacggtcggcagctagctctcaaggtt
agtgcgaactcagtctatggattcacaggcgcaacagttggccagcttccttgccttgaa
atttcatccagcgtaactagctatggaaggcagatgattgaacacaccaaaaccctcgtg
gaaggacgtttcaacacaagcaacaaatatgacaacaatgcagaagtgatctacggggat
acggattcagtaatggttcaatttggtgtctctaccgttgaggacgccatgaatcttgga
agggaggcggctgattatatcagcgagacatttaccaagcctatcaagttggaatttgag
aaagtgtacttcccctatttgctgattagcaaaaagaggtatgcaggcctactttggacg
aagcccgcaaaatacgacaaaatggacacgaaaggaattgaaacggttcggcgagataat
tgtttactagtaaaaaatgtggtgactcaaagcctccacaagattcttgttgatcgagat
gtgcctggagctgtggactttgttaagggcatgatttcggacttgctgatgaatcgtatg
gatctatcacttcttgttatcacaaagggcctcacaaaaactggcgatgattatgccgtc
aaggctgctcatgttgagcttgctgagcgtatgcgtaagcgtgatgcagccactgctcca
aatgtaggcgatcgtgttccttacgtcataattaaagccgcaaagggagctaaggcatat
gagcggtctgaggatccaatctatgtcttggaaaataacattcccatcgatcctcagtac
tatctggaaaatcagctgagtaagccactgctccggatattcgaaccaattctcaagaat
gcgagcaaggagcttctccacgggagccacactcgctccgtgtatatcacaacgccctcc
aacagtggcattatgaagttcgcgaaaaagcaactaacctgtctgggctgcaaagctata
atcagtggcggcgacacaccattgtgtaaacactgcagcggccgtgaagcggagctatac
cagagaactgttgcaaatgtgagggatttggagcagctatttggaaggctgtggactcaa
tgccagcggtgccaaggatctttacatcaagacgttttgtgcacaagtcgcgactgccca
atcttctatcgacggaaaaaagcacagaaggatctgtcggaagccgaactgcaagagcag
cgctgggacttttag
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integrated database retrieval system