Selaginella moellendorffii: SELMODRAFT_180518
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Entry
SELMODRAFT_180518 CDS
T01496
Name
(RefSeq) hypothetical protein
KO
K12585
exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
Organism
smo
Selaginella moellendorffii
Pathway
smo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SELMODRAFT_180518
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smo03019
]
SELMODRAFT_180518
Messenger RNA biogenesis [BR:
smo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
SELMODRAFT_180518
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
PIN_4
OB_Dis3
Rrp44_CSD1
Rrp44_S1
OB_HELZ2
CSD2
Motif
Other DBs
NCBI-GeneID:
9643963
NCBI-ProteinID:
XP_002983723
JGI:
180518
UniProt:
D8SKF4
LinkDB
All DBs
Position
Unknown
AA seq
939 aa
AA seq
DB search
MLKNKAFVKKNRGGRVFKVVREHYLRDDIPCGATFCSSCDTSTANLVAADRLVVVDTNVV
LHQMDLLENPAFRNVIILSVVLEEVKNKNLSAYNRLRNICANRSRQFFVFSNEHHRQDIN
YTYIKAMASESVNDRNDRAIRVATQWFQKHLGDACTVVLLTNDLDNRTKANAEGINVFSV
DHFVQSLGKPELLDLVARSESENATPMEIEDSRPSKRKIIYSEHKPMSEITAGIHQGIYH
QGKLRVNRYNPFQAYVGSESVGDEILVQGRLNMNRAFDGDVVVVELLPHESWQGDMTMIA
EEEDGDGDERVGLAPDTSDEAAVNKADEASEKATTSGGSSRPNGRVIGIIKRNWRAYCGS
LEPMTTPAGAGSVANALFVSADRRIPKIRIQTRQFGNLVDKRIVVSVDSWDLNSRYPSGH
YVKTVGKIGDRNTESEVLLIENDINNRPFSDQVLACLPPLPWSVPAEALHDPHREDLRNL
RVFSVDPIGCKDIDDALHCTLLPTGNYQVGVHIADVTSFVHPGTPLDIEARERGTSVYLV
ERRIDMLPKPLTEDVCSLRADVERFVFSVIWEMSSEADIISVRFTKGVIKSSAALSYVEA
QARMDDSRMSDPLTTDLRNMNRLAKVLRQRRIERGALTLASPEVKFEIDTETHNPLDVGM
YQVRESNHMVEEFMLLANISVAKKILSSFPVFSLLRRHPTPTPKMFEPLLKIASAVGIKL
DITSSMTLANTLDLAVGDDPYFNKLIRILATRCMTQAVYFCSGELSPPEFQHYGLASAIY
THFTSPIRRYADVIVHRLLAAALDLEKLSPSLRDKSEVTKIADNLNYRHRNAQMAGRASV
ELHTLIFFRNRPTDADARIVQIRSNGLIVFVPKYGIEGPVFLVDKASKSSTNWIMNEEQQ
CANARDGSTKYKVLDSVKIRIQVVEPQPNRPKLELTLLA
NT seq
2820 nt
NT seq
+upstream
nt +downstream
nt
atgctgaagaacaaggcgtttgtgaagaagaatcgaggcggccgggttttcaaggtcgtt
cgcgagcactacctgcgcgatgatattccctgcggcgctacgttttgttccagctgcgac
acctccactgccaatctcgttgcggccgaccggctcgttgtggtcgatacaaatgtggtg
ttacaccagatggatttgctcgaaaatccggcatttcgcaacgtgataattttatccgtt
gttctggaagaagtgaagaacaagaacttgagtgcttacaatcgcctgcgcaacatttgt
gcgaatcgatcacgtcagttcttcgttttctctaatgaacaccacaggcaagatatcaat
tatacttacatcaaggcaatggcgagtgagagtgttaacgacaggaatgacagagctatt
cgcgtcgcaacccagtggtttcagaaacacctcggagatgcgtgcactgttgttcttctg
acaaacgatcttgacaatagaaccaaggccaatgcagaaggaattaacgttttttctgtg
gaccactttgttcagtcgctaggcaagccagaattactggatttggttgctcggagtgag
tccgagaatgccactccgatggaaatagaggactcgagaccgtcaaaaagaaagatcatc
tattcagagcacaaacctatgtccgaaatcactgcgggcatacatcaaggaatatatcac
caaggaaagctgcgagttaacagatataacccgttccaagcctacgtcggtagcgaaagt
gttggcgacgagattttggttcagggaagactgaatatgaatcgagcatttgatggggat
gtggttgttgtagagcttctcccgcacgagtcttggcaaggcgacatgacaatgattgct
gaagaagaagacggcgatggtgatgaaagagtcgggcttgctcctgacacctctgatgag
gcagccgtgaacaaggcggatgaagccagtgagaaagcaacaacgtccggtggatccagc
agaccgaatggacgtgtcattggaataatcaagcggaactggagggcgtactgtggctct
ctggagccaatgacaaccccagcaggagcgggaagcgtggcaaatgcattgttcgtgtca
gcggaccgtcgaattccaaaaatccgtatccaaactcgtcagtttggtaatttggttgac
aaacgcatcgtggtgtctgtcgactcctgggatttaaactccagatatccttctggacat
tacgtgaaaactgtcggcaaaattggcgatcgtaacacagaaagcgaggttcttcttatt
gagaatgacatcaacaataggccattttcggaccaagtgttggcctgcctcccgccgttg
ccttggtcggtacccgcagaagcgttgcacgatcctcatcgtgaagatttacgaaatttg
agggtgttcagtgtagaccccattggctgcaaggatatcgatgacgctcttcactgtacc
ttgctgccaactggcaactatcaagtcggagtccatattgcggatgtaacaagctttgtt
catcctggtacacctctagacattgaagctcgggaaagaggaacatctgtttacttggtt
gaacgtcggattgacatgcttcccaagccgcttactgaagatgtgtgctctctcagagcg
gatgtagaaagatttgttttctcggtcatttgggagatgtcctcagaggcggatataatt
tcagttcgatttacaaagggcgtaatcaagtcctccgctgctctttcgtacgttgaagct
caagcccgaatggatgatagccgaatgtcggaccccttaactactgatcttcggaacatg
aatcgcctcgctaaggttttgaggcaaagacgaattgaacgcggggctcttactcttgct
tctcctgaagtgaagttcgaaattgatacagaaacacataatcctttggatgttggcatg
taccaagtaagagaatcaaatcacatggtcgaagagtttatgctgttggcaaatatttca
gtcgctaagaagatattgtcgagtttcccagtgttttctcttctcagacggcatcctacg
ccaacaccgaaaatgtttgagcctcttctaaaaattgcttcggcagtaggcatcaaactg
gacatcacttcgtctatgactctcgcaaatactcttgaccttgcagtgggggatgatcca
tacttcaacaaattgataagaattcttgcaactcggtgcatgacccaagcggtttacttt
tgcagtggcgagctaagccctccagagtttcaacattacggacttgcatcagcaatatac
acacatttcacgtctcccatcagacgatatgctgatgtgattgtacaccgcttgctggct
gcagctttggatttggaaaagctgtcaccgtccttacgcgacaaatccgaggtcacgaag
atcgcagacaatttgaactaccggcatcgaaacgcgcaaatggcaggccgagcatcagtg
gagctccacactttaatctttttcagaaacaggcctacagacgcagacgcaaggattgtg
cagatccgatccaatgggctgatagtgtttgttccaaagtatggcattgaagggcccgtg
ttcctggttgacaaggcaagcaagtcgagtaccaactggataatgaacgaggagcaacag
tgtgccaatgctcgggatggtagtacaaagtacaaagtgctagacagcgtgaagattcgc
attcaagttgtggagccgcagccaaacaggcccaagttggaactcactttactggcataa
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integrated database retrieval system
