KEGG   Selaginella moellendorffii: SELMODRAFT_186562
Entry
SELMODRAFT_186562 CDS       T01496                                 
Name
(RefSeq) hypothetical protein
  KO
K14962  COMPASS component SWD2
Organism
smo  Selaginella moellendorffii
Pathway
smo03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:smo00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    SELMODRAFT_186562
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:smo03019]
    SELMODRAFT_186562
   03036 Chromosome and associated proteins [BR:smo03036]
    SELMODRAFT_186562
Messenger RNA biogenesis [BR:smo03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     SELMODRAFT_186562
Chromosome and associated proteins [BR:smo03036]
 Eukaryotic type
  Histone modification proteins
   HMT complexes
    COMPASS/SET1 complex
     SELMODRAFT_186562
    COMPASS/SET1 complex (yeast)
     SELMODRAFT_186562
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_THOC3 Beta-prop_WDR3_1st WD40_Prp19 WD40 Beta-prop_IFT122_1st WD40_WDHD1_1st Beta-prop_EML_2 WD40_CDC20-Fz WD40_Gbeta Beta-prop_WDR36-Utp21_2nd ANAPC4_WD40 Beta-prop_CAF1B_HIR1 Beta-prop_WDR3_2nd EIF3I WDR55 Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd Beta-prop_TEP1_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_NOL10_N Beta-prop_Aladin Beta-prop_TEP1_C Beta-prop_WDR75_1st Beta-prop_SPT8 PAC11 Beta-prop_EML CFAP251_N WD40_MABP1-WDR62_1st WDR90_beta-prop_4th Beta-prop_VPS8 WD40_RFWD3 Beta-prop_NUP159_NUP214 DSE1_N NBCH_WD40 Tricorn_2nd Beta-prop_SCAP TRM82_WD Cytochrom_D1 PD40 RMC1_N DUF7165
Other DBs
NCBI-GeneID: 9650898
NCBI-ProteinID: XP_002992142
JGI: 186562
UniProt: D8T938
LinkDB
Position
Unknown
AA seq 313 aa
MEIAEDVVKNMSVGAVFKDCGGKISSLDFHRTEDLMVTAAEDASIRLYDTASATPMKTLY
SARYGVDHICFTHHTNAVIFSSSNGSDESLRYLSLYDNRFLRYFRGHTQRVVSLCMSPKN
DSFMSGSLDHTVRLWDLRSNVCQGLLRVRGRPSVAYDQQGLVFAVAMEGGAIKLFDVRSF
DKGPFDTFLVGGDTAEVAGMKFSNDGKMMLLSTTNSRVYLLDAYSGKKMHGFTLKPSRDG
ETLEASFSPDGRYVISGSGDGSLRIWSSLSGAEVACWTNNAGIPAVVKWAPRRLMFATAS
YVLAFWIPDVSKL
NT seq 942 nt   +upstreamnt  +downstreamnt
atggaaatcgcggaggatgtcgtcaagaacatgtctgtgggcgcggtcttcaaggattgt
ggggggaagatcagctccttggattttcatcgcacggaggatctcatggtgactgccgcg
gaggacgcgtccattcggctctacgatactgccagtgcgacgcccatgaagactctctac
agtgcaagatatggcgtggatcacatatgtttcacgcatcacaccaatgctgtgattttt
tcctccagcaatggaagtgatgagtccttgcggtatctatcgttgtatgataatagattt
ctacgatatttcagaggacacacgcaaagggttgtatcactatgtatgtctccaaagaac
gattctttcatgtctgggtcattggatcacactgtccggttgtgggatcttcgcagcaat
gtttgccaaggtcttcttagagtccggggaagaccgtctgtggcgtatgatcaacaaggc
ctggtatttgctgttgccatggaaggcggagcaatcaagctgtttgacgtaaggtctttc
gacaagggaccttttgacacttttctcgtgggtggtgataccgcggaagtcgctggcatg
aagtttagcaacgatggcaaaatgatgcttctctccacaacaaacagccgggtgtatttg
cttgatgcctactctggaaagaagatgcatggattcacgctcaagcccagtcgagacgga
gaaacgttggaagcatcgttcagtccagacggtcgctatgttatctcaggctccggggat
ggaagtttgagaatatggagctccttaagcggtgcagaggtagcgtgctggacgaacaac
gctggaattcctgccgtggtgaaatgggctccgcgaaggctcatgtttgcgactgcctca
tatgttttagcgttttggatacccgacgtgtccaaattgtga

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