Selaginella moellendorffii: SELMODRAFT_234671
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Entry
SELMODRAFT_234671 CDS
T01496
Name
(RefSeq) hypothetical protein
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
smo
Selaginella moellendorffii
Pathway
smo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
smo00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
SELMODRAFT_234671
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
smo03021
]
SELMODRAFT_234671
03019 Messenger RNA biogenesis [BR:
smo03019
]
SELMODRAFT_234671
Transcription machinery [BR:
smo03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
SELMODRAFT_234671
Messenger RNA biogenesis [BR:
smo03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
SELMODRAFT_234671
U7-dependent histone pre-mRNA processing factors
SELMODRAFT_234671
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B
Lactamase_B_6
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
Beta_lactamase3
Motif
Other DBs
NCBI-GeneID:
9649080
NCBI-ProteinID:
XP_002984991
JGI:
234671
UniProt:
D8SNX0
LinkDB
All DBs
Position
Unknown
AA seq
677 aa
AA seq
DB search
MLKRKDSMARNEGEKMEIMPLGAGSEVGRSCCHMTYKGKTILFDCGIHPGYTGMAALPYF
DEIDPSTIDVLLVTHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKISKG
SVEDMLYDEQDVLKTMDKIEVIDFHQTMEVNGIRFWCYTAGHVLGAAMFMVDIAGIRVLY
TGDYSREEDRHLKAAEMPEFSPDVCIIESTYGVQIHQPRHVREKRFTETIAQTVSHGGRV
LIPAFALGRAQELLLILDEYWEAHPELQHIPIYYASPLAKKCMAVYQTYINSMNDKIKSQ
YENSNPFNFKHISPLKSIEQFEDVGPSIVMASPSGLQSGLSRQLFDRWCQDRKNACVIPG
YVVEGTLAKTILNEPKEVALVSGLVVPLNMRVVYISFSAHADFAQTSAFLGELRPPHIVL
VHGEQNEMGRLKVKLQAQFAEQNVKINSPKNCQPVEFFFKGEKVAKAVGRLAEKTPDEGG
AVSGLLIKKSFTYQLMAPDDLHVYTQLSRGSIQQRLSVPYDGAFVVLRHRIEQMYDGVEH
VTKAESQTLRIHDKVTISQESNEHVVLQWVSDPVSDMIADSIIAIITKMDPRLLTDANGL
PKIEEDLTVVQSLLTSLFGDVKVDEEGKKLVISVDGVAATVDYTSRSVECDDDNLKERIK
SALHRMHNVLHPLAIES
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
atgctgaagagaaaggattcgatggcgaggaacgagggcgagaagatggagattatgcct
ctgggagctggaagcgaggtcggccgatcgtgctgccacatgacttacaagggaaagacg
attctgttcgactgtggaatccatcccgggtacactggaatggccgcgttgccgtatttc
gatgagattgatccgtcgacaatcgacgtgctgttagtaactcactttcatctcgatcac
gcggcctcgcttccatattttctggagaagaccacattcaaaggccgagtgttcatgaca
cacgcaaccaaagccatttacaagcttttgctcacggactatgtcaagatcagcaaaggg
tctgtcgaagacatgctgtatgacgagcaagacgtgctgaaaaccatggacaagatcgag
gttatagactttcaccaaactatggaggtgaatgggatacgcttctggtgctacaccgcg
ggacatgtcctcggggcagcgatgttcatggtggatatagccggtatccgggtcttatac
acaggagactactccagagaagaggatcgccacctcaaagccgcggaaatgccagagttt
tctccagacgtctgcatcatagagtcgacttatggcgttcagattcatcagccgcgacac
gtccgggagaagaggtttacggagactatagcgcaaaccgtgtctcacggaggcagagtt
ctcattccggctttcgctctaggacgagcacaggagcttctgttgattctggacgagtac
tgggaggctcacccggagctgcaacacatcccgatatactatgcttcgccgctagccaag
aagtgcatggcagtctatcagacttacatcaattccatgaacgacaagatcaagtctcag
tacgagaactcgaatcccttcaacttcaagcatatctctcctctcaagagcatcgagcag
ttcgaagatgtcgggccttcgattgttatggctagtccaagcggtttgcagagcgggctc
tctcgtcagctattcgaccgctggtgtcaggacaggaagaacgcttgcgtgataccgggt
tacgttgtggaagggacacttgcaaagactatactcaacgagccgaaggaagttgccctc
gtcagtggcctcgtagttccgctcaacatgagggtggtgtacatctctttttcggcacac
gcggactttgctcagaccagcgccttcttaggggaactaaggcctccgcacattgttctc
gttcatggagagcagaacgagatgggccgtctaaaggtcaagttacaggcgcagtttgca
gaacaaaacgtcaagataaactcgccaaagaactgccaacccgtggagttttttttcaaa
ggagagaaagttgcaaaggctgttggtaggctggcggagaaaacaccagacgaggggggc
gcagtgagcggcctgctgatcaagaagagcttcacgtaccagctgatggctccggacgac
cttcatgtttacacacagctttccaggggcagcatccagcagaggctctcagtcccatac
gacggcgcatttgttgtgctgcgacacaggattgagcagatgtacgacggcgtggaacac
gttacaaaggccgagagccagacactgaggatccatgacaaggtgacgatttctcaggag
tcaaacgagcatgtggtcctccagtgggtgtccgatccagtgagcgacatgatagcggat
tcaataattgcgatcatcacgaagatggatcctcgcttgctgacggacgccaatggtctg
ccgaagattgaggaggatcttacggttgtccagtcgctgctcacgtctttgtttggagac
gtcaaagtagacgaggaagggaagaagctcgtgatttctgtggacggagttgctgccact
gtggactacaccagccgcagcgtcgagtgtgacgatgacaatctcaaagaacgcatcaaa
tctgctcttcacagaatgcataatgttctacaccctctggcgattgaaagctga
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integrated database retrieval system
