KEGG   Selaginella moellendorffii: SELMODRAFT_234972
Entry
SELMODRAFT_234972 CDS       T01496                                 
Name
(RefSeq) hypothetical protein
  KO
K14403  cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
smo  Selaginella moellendorffii
Pathway
smo03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:smo00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    SELMODRAFT_234972
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:smo03021]
    SELMODRAFT_234972
   03019 Messenger RNA biogenesis [BR:smo03019]
    SELMODRAFT_234972
Transcription machinery [BR:smo03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     SELMODRAFT_234972
Messenger RNA biogenesis [BR:smo03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     SELMODRAFT_234972
    U7-dependent histone pre-mRNA processing factors
     SELMODRAFT_234972
SSDB
Motif
Pfam: CPSF73-100_C Beta-Casp Lactamase_B Lactamase_B_6 RMMBL Anti-Pycsar_Apyc1 Lactamase_B_2 Lactamase_B_3 Beta_lactamase3
Other DBs
NCBI-GeneID: 9639855
NCBI-ProteinID: XP_002986181
JGI: 234972
UniProt: D8SSB6
LinkDB
Position
Unknown
AA seq 684 aa
MASSASTQRQRKDSMARNEGEKMEIMPLGAGSEVGRSCCHMTYKGKTILFDCGIHPGYTG
MAALPYFDEIDPSTIDVLLVTHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTD
YVKISKGSVEDMLYDEQDVLKTMDKIEVIDFHQTMEVNGIRFWCYTAGHVLGAAMFMVDI
AGIRVLYTGDYSREEDRHLKAAEMPEFSPDVCIIESTYGVQIHQPRHVREKRFTETIAQT
VSHGGRVLIPAFALGRAQELLLILDEYWEAHPELQHIPIYYASPLAKKCMAVYQTYINSM
NDKIKSQYENSNPFNFKHISPLKSIEQFEDVGPSIVMASPSGLQSGLSRQLFDRWCQDRK
NACVIPGYVVEGTLAKTILNEPKEVALVSGLVVPLNMRVVYISFSAHADFAQTSAFLGEL
RPPHIVLVHGEQNEMGRLKVKLQAQFAEQNVKINSPKNCQPVEFFFKGEKVAKAVGRLAE
KTPDEGGAVSGLLIKKSFTYQLMAPDDLHVYTQLSRGSIQQRLSVPYDGAFVVLRHRIEQ
MYDGVEHVTKAESQTLRIHDKVTISQESNEHVVLQWVSDPVSDMIADSIIAIITKMDPRL
LTDANGLPKIEEDLTVVQSLLTSLFGDVKVDEEGKKLVISVDGVAATVDYTSRSVECDDD
NLKERIKSALHRMHNVLHPLAIES
NT seq 2055 nt   +upstreamnt  +downstreamnt
atggcgagctcggcctcgacacaacgtcagagaaaggattcgatggcgaggaacgagggc
gagaagatggagattatgcctctgggagctggaagcgaggtcggccgatcgtgctgccac
atgacttacaagggaaagacgattctgttcgactgtggaatccatcccgggtacactgga
atggccgcgttgccgtatttcgatgagattgatccgtcgacaatcgacgtgctgttagta
actcactttcatctcgatcacgcggcctcgcttccatattttctggagaagaccacattc
aaaggccgagtgttcatgacacacgcaaccaaagccatttacaagcttttgctcacggac
tatgtcaagatcagcaaagggtctgtcgaagacatgctgtatgacgagcaagacgtgctg
aaaaccatggacaagatcgaggttatagactttcaccaaactatggaggtgaatgggata
cgcttctggtgctacaccgcgggacatgtcctcggggcagcgatgttcatggtggatata
gccggtatccgggtcttatacacaggagactactccagagaagaggatcgccacctcaaa
gccgcggaaatgccagagttttctccagacgtctgcatcatagagtcgacttatggcgtt
cagattcatcagccgcgacacgtccgggagaagaggtttacggagactatagcacaaacc
gtgtctcacggaggcagagttctcattccggctttcgctctaggacgagcacaggagctt
ctgttgattctagacgagtactgggaggctcacccggagctgcaacacatcccgatctac
tatgcttcaccgctagccaagaagtgcatggcggtctatcagacttacatcaattccatg
aacgacaagatcaagtctcagtacgagaactcgaatcccttcaacttcaagcatatctct
cctctcaagagcatcgagcagttcgaagatgtcgggccttcgattgttatggctagtcca
agcggtttgcagagcgggctctctcgtcagctattcgaccgctggtgtcaggacaggaag
aacgcttgcgtgataccgggttacgttgtggaagggacacttgcaaagactatactcaac
gagccgaaggaagttgccctcgtcagtggcctcgtagttccgctcaacatgagggtggtg
tacatctctttttcggcacacgcggactttgctcagaccagcgccttcttaggggaacta
aggcctccgcacattgttctcgttcatggagagcagaacgagatgggccgtctaaaggtc
aagttacaggcgcagtttgcagaacaaaacgtcaagataaactcgccaaagaactgccaa
cccgtggagttttttttcaaaggagagaaagttgcaaaggctgttggtaggctggcggag
aaaacaccagacgaggggggcgcagtgagcggcctgctgatcaagaagagcttcacgtac
cagctgatggctccggacgaccttcatgtttacacacagctttccaggggcagcatccag
cagaggctctcagtcccatacgacggcgcatttgttgtgctgcgacacaggattgagcag
atgtacgacggcgtggaacacgttacaaaggccgagagccagacactgaggatccatgac
aaggtgacgatttctcaggagtcaaacgagcatgtggtcctccagtgggtgtccgatcca
gtgagcgacatgatagcggattcaataattgcgatcatcacgaagatggatcctcgcttg
ctgacggacgccaatggtctgccgaagattgaggaggatcttacggttgtccagtcgctg
ctcacgtctttgtttggagacgtcaaagtagacgaggaagggaagaagctcgtgatttct
gtggacggagttgctgccactgtggactacaccagccgcagcgtcgagtgtgacgacgac
aatctcaaagaacgcatcaaatctgctcttcacagaatgcataatgttctacaccctctg
gcgattgaaagctga

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