KEGG   Selaginella moellendorffii: SELMODRAFT_235717
Entry
SELMODRAFT_235717 CDS       T01496                                 
Name
(RefSeq) hypothetical protein
  KO
K12614  ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
Organism
smo  Selaginella moellendorffii
Pathway
smo03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:smo00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    SELMODRAFT_235717
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:smo03019]
    SELMODRAFT_235717
   03036 Chromosome and associated proteins [BR:smo03036]
    SELMODRAFT_235717
Enzymes [BR:smo01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     SELMODRAFT_235717
Messenger RNA biogenesis [BR:smo03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     SELMODRAFT_235717
  mRNA degradation factors
   5'-3' decay
    Decapping complex
     SELMODRAFT_235717
Chromosome and associated proteins [BR:smo03036]
 Eukaryotic type
  Gene silencing
   piRNA pathway
    SELMODRAFT_235717
SSDB
Motif
Pfam: DEAD Helicase_C ResIII CMS1 Cas3-like_C_2 DS
Other DBs
NCBI-GeneID: 9629847
NCBI-ProteinID: XP_002989208
JGI: 235717
UniProt: D8SVC8
LinkDB
Position
Unknown
AA seq 362 aa
MGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPAIEKIDPNKNAIQVL
ILVPTRELALQTSQVCKELAKHLKIETMVTTGGTSLKDDIMRLYQPVHLLVGTPGRVLDL
ANKGVCKLKDCSMMVMDEADKLLSPEIQPLVERLLSFLPESRQVLLFSATFPVTVKQFKE
KFLRKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVEL
LAKKITELGYSCFYIHAKMLQSHRNRVFHDFRNGACRNLVSSDLFTRGIDIQAVNVVINF
DFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKPIPPQIDQAIY
CR
NT seq 1089 nt   +upstreamnt  +downstreamnt
atgggaatctatgagaaaggcttcgagcggccatctcccatacaggaggagagcatccct
atcgccttaacaggcagcgacatattggcgagggcgaagaacgggactggaaagactgcg
gctttttgcattccagcgatcgagaaaatagatccaaacaaaaatgctatccaggttctg
atcttggtgcccacgcgcgagctcgcgctacagacgtcccaagtatgcaaagaacttgca
aaacatctcaagattgagacaatggtcacgactggagggacgagtctgaaagacgatatc
atgcggctatatcaaccagtgcatcttctggttgggactcctggtcgggtactggacctg
gccaacaagggcgtttgcaagctcaaggattgctcgatgatggtgatggacgaggctgac
aagcttctctcaccggagatccagcctttggtggaacgattgctgagcttccttcccgaa
agccgccaggttctactcttttcggcaacgttccctgtcacagtgaagcagttcaaagag
aagtttctccggaagccttacgtcattaacctgatggacgagctaacgctgaagggtata
acccagtactacgcgttcgtcgaggaaagacagaaggttcactgcctcaacacgctgttc
tccaagctacaaataaaccagtcgatcatcttctgcaactccgtcaatcgtgttgagcta
ctagctaagaagatcaccgagctcggatactcgtgcttctacatccacgccaagatgctc
cagtctcatcggaacagagtgttccacgactttcgaaacggggcctgccgcaatctcgtg
tcctctgacctttttacaagagggattgacattcaggcggttaacgtcgtcattaacttc
gacttccccaagaactccgagacataccttcacagggttggtcgctcagggaggtttggt
cacctcggcctcgctgtaaatttgataacctacgaagatcgcttcaacttataccggatt
gagcaagagctgggaactgagatcaagcccatccctcctcagattgatcaagcgatttac
tgcaggtga

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