KEGG   Selaginella moellendorffii: SELMODRAFT_236274
Entry
SELMODRAFT_236274 CDS       T01496                                 
Name
(RefSeq) hypothetical protein
  KO
K10756  replication factor C subunit 3/5
Organism
smo  Selaginella moellendorffii
Pathway
smo03030  DNA replication
smo03410  Base excision repair
smo03420  Nucleotide excision repair
smo03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:smo00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    SELMODRAFT_236274
   03410 Base excision repair
    SELMODRAFT_236274
   03420 Nucleotide excision repair
    SELMODRAFT_236274
   03430 Mismatch repair
    SELMODRAFT_236274
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:smo03032]
    SELMODRAFT_236274
   03036 Chromosome and associated proteins [BR:smo03036]
    SELMODRAFT_236274
   03400 DNA repair and recombination proteins [BR:smo03400]
    SELMODRAFT_236274
DNA replication proteins [BR:smo03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    SELMODRAFT_236274
  DNA Replication Termination Factors
   ELG1-RFC complex
    SELMODRAFT_236274
Chromosome and associated proteins [BR:smo03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    SELMODRAFT_236274
DNA repair and recombination proteins [BR:smo03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     SELMODRAFT_236274
  Check point factors
   HRAD17(Rad24)-RFC complex
    SELMODRAFT_236274
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 Rad17 RCF1-5-like_lid AAA_22 AAA_assoc_2 AAA_11 AAA_14 AAA_16 AAA_24 AAA_5 DEAD ResIII DUF815 RuvB_N DNAX_ATPase_lid AAA_19 AAA_30 AAA_7 bpMoxR nSTAND3 ATPase_2 Sigma54_activ_2 Mg_chelatase AAA_3 AAA_28 AAA_18 SLFN-g3_helicase TIP49 AAA_25
Other DBs
NCBI-GeneID: 9639485
NCBI-ProteinID: XP_002991370
JGI: 236274
UniProt: D8SY80
LinkDB
Position
Unknown
AA seq 332 aa
MTQELQRSGPWVEKYRPASLADVAAHKDIIDTIDRLTAENKLPHLLLYGPPGTGKTSTIL
AVARKLYGPQFQNMILELNASDDRGIDVVRQQIQDFASTQSISFGEKANVKLIILDEADA
MTKDAQFSLRRIIEKYTKNTRFCLICNYVSKIIPALQSRCTRFRFPPLQAQHVRERLEFV
IDQERLDVTEDGLSAIVRLSNGDMRKALNILQSTQMAEPHVTEAAVYSCTGNPTPKEIEQ
IASWLLNESFQSAYSNIVQLKTSKGLALVDVVRELQPFIFTISMPGNIRVPLINCLADIE
YRLASGPNEKLQLGALVSAFTHTRVALVSAAR
NT seq 999 nt   +upstreamnt  +downstreamnt
atgacgcaggagctacagcgatccgggccctgggtggagaagtatcgccctgcgtctctc
gcggacgttgcagcgcacaaggatatcatcgatacaattgacaggctcactgcggagaac
aagttgccccatttgcttctctacgggcctcccgggacaggaaaaacatccacgattttg
gctgtggcacgcaagctctatggtccgcagttccagaatatgattttggagctcaatgcc
tcggacgatcgaggtattgatgttgtgagacagcagatacaagactttgctagcacgcag
agtatctcctttggagagaaagcgaatgttaaacttataatcctggatgaagcagatgcc
atgaccaaggatgcgcagttttctctgcggagaatcattgagaaatacacgaagaacaca
aggttttgtttgatttgcaactacgtcagcaagattatcccagcgctgcagtctcgatgc
acacgttttcgttttcctcctcttcaagcacagcatgtcagggagcgccttgagttcgta
attgaccaggaaaggctggatgtcacggaagatggcctgtctgccatcgtgagacttagc
aatggcgacatgcggaaggctttaaatatccttcagtcgacgcaaatggccgagccgcat
gtcacggaagcagcagtttactcatgcacaggaaaccccacgccaaaggaaatcgagcag
attgcgtcctggcttctgaacgagtcattccagtcggcttacagcaatatcgtgcagcta
aagacaagcaaaggactggcgctggtggacgttgttagggagctgcagccgttcatcttt
accatcagcatgcccggcaacatccgcgtgcctctcatcaattgcctcgcggacatcgag
tacaggcttgcgtctggacccaacgagaagctccaactgggagcgctagtgagtgccttc
actcacacacgcgtagccttggtttctgccgcaagataa

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