KEGG   Selaginella moellendorffii: SELMODRAFT_236963
Entry
SELMODRAFT_236963 CDS       T01496                                 
Name
(RefSeq) hypothetical protein
  KO
K14403  cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
smo  Selaginella moellendorffii
Pathway
smo03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:smo00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    SELMODRAFT_236963
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:smo03021]
    SELMODRAFT_236963
   03019 Messenger RNA biogenesis [BR:smo03019]
    SELMODRAFT_236963
Transcription machinery [BR:smo03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     SELMODRAFT_236963
Messenger RNA biogenesis [BR:smo03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     SELMODRAFT_236963
    U7-dependent histone pre-mRNA processing factors
     SELMODRAFT_236963
SSDB
Motif
Pfam: CPSF73-100_C Beta-Casp Lactamase_B Lactamase_B_6 RMMBL Anti-Pycsar_Apyc1 Lactamase_B_2 Lactamase_B_3 Beta_lactamase3
Other DBs
NCBI-GeneID: 9641038
NCBI-ProteinID: XP_002994439
JGI: 236963
UniProt: D8SNX0
LinkDB
Position
Unknown
AA seq 677 aa
MLKRKDSMARNEGEKMEIMPLGAGSEVGRSCCHMTYKGKTILFDCGIHPGYTGMAALPYF
DEIDPSTIDVLLVTHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKISKG
SVEDMLYDEQDVLKTMDKIEVIDFHQTMEVNGIRFWCYTAGHVLGAAMFMVDIAGIRVLY
TGDYSREEDRHLKAAEMPEFSPDVCIIESTYGVQIHQPRHVREKRFTETIAQTVSHGGRV
LIPAFALGRAQELLLILDEYWEAHPELQHIPIYYASPLAKKCMAVYQTYINSMNDKIKSQ
YENSNPFNFKHISPLKSIEQFEDVGPSIVMASPSGLQSGLSRQLFDRWCQDRKNACVIPG
YVVEGTLAKTILNEPKEVALVSGLVVPLNMRVVYISFSAHADFAQTSAFLGELRPPHIVL
VHGEQNEMGRLKVKLQAQFAEQNVKINSPKNCQPVEFFFKGEKVAKAVGRLAEKTPDEGG
AVSGLLIKKSFTYQLMAPDDLHVYTQLSRGSIQQRLSVPYDGAFVVLRHRIEQMYDGVEH
VTKAESQTLRIHDKVTISQESNEHVVLQWVSDPVSDMIADSIIAIITKMDPRLLTDANGL
PKIEEDLTVVQSLLTSLFGDVKVDEEGKKLVISVDGVAATVDYTSRSVECDDDNLKERIK
SALHRMHNVLHPLAIES
NT seq 2034 nt   +upstreamnt  +downstreamnt
atgctgaagagaaaggattcgatggcgaggaacgagggcgagaagatggagattatgcct
ctgggagctggaagcgaggtcggccgatcgtgctgccacatgacttacaagggaaagacg
attctgttcgactgtggaatccatcccggctacactggaatggccgcgttgccgtatttc
gatgagattgatccgtcgacaatcgacgtgctgttagtaactcactttcatctcgatcac
gcggcctcgcttccatattttctggagaagaccacattcaaaggccgagtgttcatgaca
cacgcaaccaaagccatttacaagcttttgctcacggactatgtcaagatcagcaaaggg
tctgtcgaagacatgctgtatgacgagcaagacgtgctgaaaaccatggacaagatcgag
gttatagactttcaccaaactatggaggtgaatgggatacgcttctggtgctacaccgcg
ggacatgtcctcggggcagcgatgttcatggtggatatagccggtatccgggtcttatac
acaggagactactccagagaagaggatcgccacctcaaagccgcggaaatgccagagttt
tctccagacgtctgcatcatagagtcgacttatggcgttcagattcatcagccgcgacac
gtccgggagaagaggtttacggagactatagcgcaaaccgtgtctcacggaggcagagtt
ctcattccggctttcgctctaggacgagcacaggagcttctgttgattctggacgagtac
tgggaggctcacccggagctgcaacacatcccgatatactatgcttcgccgctagccaag
aagtgcatggcagtctatcagacttacatcaattccatgaacgacaagatcaagtctcag
tacgagaactcgaatcccttcaacttcaagcatatctctcctctcaagagcatcgagcag
ttcgaagatgtcgggccttcgattgttatggctagtccaagcggtttgcagagcggcctc
tctcgtcagctattcgaccgctggtgtcaggacaggaagaacgcttgcgtgatacctggt
tacgttgtggaagggacacttgcaaagactatactgaacgagccgaaggaagttgccctc
gtcagtggcctcgtagttccgctcaacatgagggtggtgtacatctctttctcggcacac
gcggactttgctcagaccagcgccttcttaggggaactaaggcctccgcacattgttctc
gttcatggagagcagaacgagatgggccgtctaaaggtcaagttacaggcgcagtttgca
gaacaaaacgtcaagataaactcgccaaagaactgccaacccgtggagttttttttcaaa
ggagagaaagttgcaaaggctgttggtaggctggcggagaaaacaccagacgaggggggc
gcagtgagcggcctgctgatcaagaagagcttcacgtaccagctgatggctccggacgac
cttcatgtttacacacagctttccaggggcagcatccagcagaggctctcagtcccatac
gacggcgcatttgttgtgctgcgacacaggattgagcagatgtacgacggcgtggaacac
gttacaaaagccgagagccagacactgaggatccatgacaaggtgacgatttctcaggag
tcaaacgagcatgtggtcctccagtgggtgtctgatccagtgagcgacatgatagcggat
tcaataattgcgatcatcacgaagatggatcctcgcttgctgacggacgccaatggtctg
ccgaagattgaggaggatcttacggttgtccagtcgctgctcacgtctttgtttggagac
gtcaaagtagacgaggaagggaagaagctcgtgatttctgtggacggagttgctgccact
gtggactacaccagccgcagcgtcgagtgtgacgatgacaatctcaaagaacgcatcaaa
tctgctcttcacagaatgcataatgttctacaccctctggcgattgaaagctga

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