KEGG   Selaginella moellendorffii: SELMODRAFT_266832
Entry
SELMODRAFT_266832 CDS       T01496                                 
Name
(RefSeq) hypothetical protein
  KO
K10570  DNA excision repair protein ERCC-8
Organism
smo  Selaginella moellendorffii
Pathway
smo03420  Nucleotide excision repair
smo04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:smo00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    SELMODRAFT_266832
  09124 Replication and repair
   03420 Nucleotide excision repair
    SELMODRAFT_266832
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:smo04121]
    SELMODRAFT_266832
   03400 DNA repair and recombination proteins [BR:smo03400]
    SELMODRAFT_266832
Ubiquitin system [BR:smo04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     SELMODRAFT_266832
DNA repair and recombination proteins [BR:smo03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      SELMODRAFT_266832
SSDB
Motif
Pfam: WD40_Prp19 WD40 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_TEP1_2nd Beta-prop_IFT122_1st NBCH_WD40 Beta-prop_RIG_2nd Beta-prop_CAF1B_HIR1 EIF3I WD40_MABP1-WDR62_2nd WDR55 Beta-prop_EIPR1 Beta-prop_EML_2 Beta-prop_EML ANAPC4_WD40 Beta-prop_SPT8 Beta-prop_WDR90_POC16_2nd Beta-prop_WDR75_1st WD40_RFWD3 WDR90_beta-prop_4th Beta-prop_IFT140_1st Beta-prop_TEP1_C Beta-prop_LRRK2 WD_LRWD1 eIF2A Beta-prop_DCAF12 Beta-prop_DCAF4 Beta-prop_WDR35_TULP_N Beta-prop_VPS8 Beta-prop_SCAP WDR54 Beta-prop_WDR11_2nd Beta-prop_WDR11_1st
Other DBs
NCBI-GeneID: 9659910
NCBI-ProteinID: XP_002964773
JGI: 266832
UniProt: D8R1U5
LinkDB
Position
Unknown
AA seq 392 aa
MWSGLRERELGAPPWRYAASVRRMRSRALELCKTKDVISSGRGAVNSLQIDPVEARYMLA
GNGNGSISVYDISQPTTVEHYSQKHEALFSMDKAHRYCVSSVRWYPVDTGIFISGSFDKH
INVWDANTLEVGDLFFVGADAIQNARKVFGVSMSPVSTTHMLIATGTEDYRIRLCDISSG
AFTHALSAHRDAVWAVKWSASSEWILISGGCDGAIRLWDIRRAGCFYVLDQHRSSASQEG
NCFLLVLFCSTSALDRSTAHYGTVTSLQTDTTFLVRSQAMGHRNTLVNYEPTNINGNLTC
ELEVSGDKPLVFVPCLTSIQVYDMLSGRLLSTLKGHYELVNCCAYHSQSQELYSGSNDRR
ILVWSPKQSAFQDEALGTIAAQVQADEDNWSD
NT seq 1179 nt   +upstreamnt  +downstreamnt
atgtggagtggtcttcgagagcgcgagctcggggcaccgccatggcgctacgctgcttct
gttcgccggatgagatctcgcgcattggagctgtgcaagaccaaggatgtgatttcgtct
ggcagaggcgctgtgaacagcttgcagattgatcccgtggaagctagatatatgcttgct
ggcaatggaaatggatcgatcagtgtctatgacatatcacagccaacgacggtggagcat
tactctcaaaagcacgaagctctcttttctatggacaaagcccataggtactgcgtttca
tcagttcgatggtatccagtggacactggaatttttatctctggctcgttcgacaagcat
ataaatgtttgggatgcaaacactctcgaggttggagaccttttctttgttggtgctgat
gcaatccaaaatgccaggaaggttttcggtgtaagcatgtcacccgtttctacgactcac
atgcttatagctacaggcacggaggactatcgcataaggctttgcgatatatcttctggt
gctttcacccatgcccttagcgctcaccgagatgctgtttgggcggtgaaatggtctgca
tcttccgaatggattttaatttccggaggttgtgacggtgcgatccggttgtgggacata
agacgtgcgggttgcttctatgttcttgaccagcatcgttcttctgcttctcaggaaggc
aattgtttccttctcgttctcttttgttctacttcggctctggaccgttccacggcgcac
tatggcacagtgacatcgctccagacggacactaccttcttagtgcggagtcaagctatg
ggacatagaaatactcttgtgaattacgagccaacaaacataaacggaaatctgacgtgc
gaacttgaggtctctggagacaagccactggtgttcgttccatgtctaacctcgatacag
gtgtacgatatgttgagcggtcgcttgctttccaccttaaaaggacactacgaacttgta
aactgttgtgcttatcacagtcaatcacaggaactctacagtggaagcaatgatcgtaga
atactcgtctggtctccaaaacagtcggctttccaggacgaagctctaggaactattgcg
gctcaagtgcaagccgacgaggacaattggagcgattga

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