Selaginella moellendorffii: SELMODRAFT_266832
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Entry
SELMODRAFT_266832 CDS
T01496
Name
(RefSeq) hypothetical protein
KO
K10570
DNA excision repair protein ERCC-8
Organism
smo
Selaginella moellendorffii
Pathway
smo03420
Nucleotide excision repair
smo04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
smo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
SELMODRAFT_266832
09124 Replication and repair
03420 Nucleotide excision repair
SELMODRAFT_266832
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
smo04121
]
SELMODRAFT_266832
03400 DNA repair and recombination proteins [BR:
smo03400
]
SELMODRAFT_266832
Ubiquitin system [BR:
smo04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
SELMODRAFT_266832
DNA repair and recombination proteins [BR:
smo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Cul4-CSA complex
SELMODRAFT_266832
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
Beta-prop_IFT122_1st
NBCH_WD40
Beta-prop_RIG_2nd
Beta-prop_CAF1B_HIR1
EIF3I
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_EIPR1
Beta-prop_EML_2
Beta-prop_EML
ANAPC4_WD40
Beta-prop_SPT8
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR75_1st
WD40_RFWD3
WDR90_beta-prop_4th
Beta-prop_IFT140_1st
Beta-prop_TEP1_C
Beta-prop_LRRK2
WD_LRWD1
eIF2A
Beta-prop_DCAF12
Beta-prop_DCAF4
Beta-prop_WDR35_TULP_N
Beta-prop_VPS8
Beta-prop_SCAP
WDR54
Beta-prop_WDR11_2nd
Beta-prop_WDR11_1st
Motif
Other DBs
NCBI-GeneID:
9659910
NCBI-ProteinID:
XP_002964773
JGI:
266832
UniProt:
D8R1U5
LinkDB
All DBs
Position
Unknown
AA seq
392 aa
AA seq
DB search
MWSGLRERELGAPPWRYAASVRRMRSRALELCKTKDVISSGRGAVNSLQIDPVEARYMLA
GNGNGSISVYDISQPTTVEHYSQKHEALFSMDKAHRYCVSSVRWYPVDTGIFISGSFDKH
INVWDANTLEVGDLFFVGADAIQNARKVFGVSMSPVSTTHMLIATGTEDYRIRLCDISSG
AFTHALSAHRDAVWAVKWSASSEWILISGGCDGAIRLWDIRRAGCFYVLDQHRSSASQEG
NCFLLVLFCSTSALDRSTAHYGTVTSLQTDTTFLVRSQAMGHRNTLVNYEPTNINGNLTC
ELEVSGDKPLVFVPCLTSIQVYDMLSGRLLSTLKGHYELVNCCAYHSQSQELYSGSNDRR
ILVWSPKQSAFQDEALGTIAAQVQADEDNWSD
NT seq
1179 nt
NT seq
+upstream
nt +downstream
nt
atgtggagtggtcttcgagagcgcgagctcggggcaccgccatggcgctacgctgcttct
gttcgccggatgagatctcgcgcattggagctgtgcaagaccaaggatgtgatttcgtct
ggcagaggcgctgtgaacagcttgcagattgatcccgtggaagctagatatatgcttgct
ggcaatggaaatggatcgatcagtgtctatgacatatcacagccaacgacggtggagcat
tactctcaaaagcacgaagctctcttttctatggacaaagcccataggtactgcgtttca
tcagttcgatggtatccagtggacactggaatttttatctctggctcgttcgacaagcat
ataaatgtttgggatgcaaacactctcgaggttggagaccttttctttgttggtgctgat
gcaatccaaaatgccaggaaggttttcggtgtaagcatgtcacccgtttctacgactcac
atgcttatagctacaggcacggaggactatcgcataaggctttgcgatatatcttctggt
gctttcacccatgcccttagcgctcaccgagatgctgtttgggcggtgaaatggtctgca
tcttccgaatggattttaatttccggaggttgtgacggtgcgatccggttgtgggacata
agacgtgcgggttgcttctatgttcttgaccagcatcgttcttctgcttctcaggaaggc
aattgtttccttctcgttctcttttgttctacttcggctctggaccgttccacggcgcac
tatggcacagtgacatcgctccagacggacactaccttcttagtgcggagtcaagctatg
ggacatagaaatactcttgtgaattacgagccaacaaacataaacggaaatctgacgtgc
gaacttgaggtctctggagacaagccactggtgttcgttccatgtctaacctcgatacag
gtgtacgatatgttgagcggtcgcttgctttccaccttaaaaggacactacgaacttgta
aactgttgtgcttatcacagtcaatcacaggaactctacagtggaagcaatgatcgtaga
atactcgtctggtctccaaaacagtcggctttccaggacgaagctctaggaactattgcg
gctcaagtgcaagccgacgaggacaattggagcgattga
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integrated database retrieval system