Selaginella moellendorffii: SELMODRAFT_267846
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Entry
SELMODRAFT_267846 CDS
T01496
Symbol
PUB49-2
Name
(RefSeq) ubiquitin-protein ligase, PUB49
KO
K10598
peptidyl-prolyl cis-trans isomerase-like 2 [EC:
5.2.1.8
]
Organism
smo
Selaginella moellendorffii
Pathway
smo04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
smo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
SELMODRAFT_267846 (PUB49-2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
smo03041
]
SELMODRAFT_267846 (PUB49-2)
03110 Chaperones and folding catalysts [BR:
smo03110
]
SELMODRAFT_267846 (PUB49-2)
04121 Ubiquitin system [BR:
smo04121
]
SELMODRAFT_267846 (PUB49-2)
Enzymes [BR:
smo01000
]
5. Isomerases
5.2 cis-trans-Isomerases
5.2.1 cis-trans Isomerases (only sub-subclass identified to date)
5.2.1.8 peptidylprolyl isomerase
SELMODRAFT_267846 (PUB49-2)
Spliceosome [BR:
smo03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
SELMODRAFT_267846 (PUB49-2)
Complex C
U4/U6.U5 tri-SnRNP related factors
SELMODRAFT_267846 (PUB49-2)
Other splicing related proteins
Minor spliceosome components
Minor spliceosome associated proteins
SELMODRAFT_267846 (PUB49-2)
Chaperones and folding catalysts [BR:
smo03110
]
Protein folding catalysts
Peptidyl prolyl isomerase
Cyclophilin
SELMODRAFT_267846 (PUB49-2)
Ubiquitin system [BR:
smo04121
]
Ubiquitin ligases (E3)
U-box type E3
SELMODRAFT_267846 (PUB49-2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pro_isomerase
Rtf2
U-box
zf-Nse
zf-NOSIP
V-set_CD47
Sld7_N
Motif
Other DBs
NCBI-GeneID:
9629439
NCBI-ProteinID:
XP_002975433
JGI:
267846
UniProt:
D8RWA5
LinkDB
All DBs
Position
Unknown
AA seq
576 aa
AA seq
DB search
MGKKQHSKDRLFITRTEWATEWGGAKDRDVRLPFKRLPYYCCALTFTPFSDPMCTKEGHV
FELMHIVPYVQKHKKNPVTGTPLSLKDLIKLEFHKNADGEYHCPVLHKVFTEFTHIVAIK
TTGNVFSYEAIKELNLKAKNWKELLTDEPFSRNDIITIQDPNQLETKVLSEFDHVQKEII
VESEEMRKMKEDPEYYINMSEDTKRMLRDLGTEKAKQVADEGGGGGKAQTQRAAALAAVK
SAKEIPEDTTPAPAMSIVDKASAALHGKPHASAKALSAEKSAARVAAHVAGERVPVNTQL
VKSRYSSGAASRSLTSTTYAPVTTNEEEFVKAEKNPKKKGYAKLQTTHGELNIELHCDMA
PRTCENFLTLCERGYYDGVIFHRNIRNFMVQGGDPTGTGHGGKSIWGKPFKDEFHSKLQH
SGRGILSMANSGPHSNGSQFFILYKSAPHLNRKHTVFGNVVGGIEALSIMDKVPVDDEDR
PLEEIKILKASVYVNPYTEPEEPEEQKHKAEETETENDKVGSWYSNPPVSTGGGVAKYLK
SSVKLASSLHADSEELPRKKITADSGGVAFKDFSGW
NT seq
1731 nt
NT seq
+upstream
nt +downstream
nt
atgggcaagaagcagcacagcaaggatcggctcttcatcacacgcacggaatgggcgacg
gaatggggaggcgccaaggacagggacgtgcgccttccgttcaagcgccttccatactac
tgctgcgcgcttactttcacgccattctccgatccaatgtgtacgaaagaggggcacgtc
ttcgagctcatgcatatcgtgccttatgtgcagaagcataagaagaatcctgtcactggc
actcctctcagcttgaaggatttgatcaagctagagtttcacaaaaacgcagatggagag
tatcactgtcctgtccttcacaaagtcttcacagaattcacacacattgttgcgattaag
acgactgggaacgtcttctcgtacgaggcaatcaaggagctcaatttgaaggccaaaaac
tggaaagaacttctaactgatgaaccctttagcaggaatgatataatcaccattcaggat
cctaaccagctcgagacaaaagttctgtcagagttcgatcatgttcaaaaggaaattatt
gtcgaaagcgaagagatgaggaagatgaaagaagacccggagtactacatcaacatgtcc
gaagataccaagcgtatgctgcgagatctgggaaccgagaaagcgaaacaagtggcagac
gaaggtggtggtggtggtaaagctcagacacagcgtgctgccgctcttgcggctgtgaaa
tcagctaaagagattcctgaggacacaactcctgctccagcaatgagcattgttgacaaa
gcgtctgctgctctacacgggaaacctcacgcctccgccaaagcgctgagtgcagagaag
tccgctgctcgtgttgctgctcatgtcgccggcgagcgtgtgcccgttaacacgcagctg
gtgaagagccggtattcgtcgggggctgcttctcgatcattaacttcaacaacgtacgct
ccagtgacgacgaacgaagaggagtttgtgaaagcggaaaaaaatccgaaaaagaaagga
tacgccaagcttcaaaccacgcatggcgagcttaacatcgagctgcactgcgacatggca
ccacggacgtgcgagaacttcctgaccctttgcgagcgcggctactacgatggtgtcata
tttcatcgaaacatcaggaatttcatggttcaaggaggcgatcccacaggcacgggacac
ggagggaagtctatatggggaaagcctttcaaagatgagtttcactccaagctgcaacat
tccggcagaggcatactaagcatggccaacagtggtcctcacagtaacggttcgcagttt
tttattctctacaagtcggcaccacatttgaatcgcaagcacacggtgtttggcaacgtg
gtgggaggcatcgaagctttgtctattatggataaagttcctgtagacgatgaggatcgt
cctttggaagaaatcaaaatcctgaaggcttcggtttacgtgaacccgtacacagaacca
gaggaaccagaagaacaaaaacacaaagccgaagaaacagagacggagaacgacaaggtc
ggatcatggtacagtaatccacctgtatcgactggcggcggagttgccaaataccttaaa
tcaagcgtgaagctagcttcgtctctacatgctgacagcgaagagctgccaaggaaaaag
atcactgctgactctggcggagttgcatttaaagacttctccggatggtga
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