Selaginella moellendorffii: SELMODRAFT_270418
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Entry
SELMODRAFT_270418 CDS
T01496
Name
(RefSeq) hypothetical protein
KO
K14408
cleavage stimulation factor subunit 3
Organism
smo
Selaginella moellendorffii
Pathway
smo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
smo00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
SELMODRAFT_270418
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smo03019
]
SELMODRAFT_270418
Messenger RNA biogenesis [BR:
smo03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
SELMODRAFT_270418
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Suf
HAT_PRP39_N
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
TPR_14
HAT_Syf1_CNRKL1_C
TPR_19
HAT_Syf1_M
Motif
Other DBs
NCBI-GeneID:
9654369
NCBI-ProteinID:
XP_002963983
JGI:
270418
UniProt:
D8QYX6
LinkDB
All DBs
Position
Unknown
AA seq
790 aa
AA seq
DB search
MINDGKLFKAQIPERSLLAAPADGAAAAAADSSSPSPSGSSRRSLFSHLGPPASDKERAA
RERIDAQKYDVEAWEILADEAQSRPIAHATGIFELLVSTFPTAGKFWKMYAEAMIKASND
DAVRHIFSRCLLSCFHLELWKCYIKFIRRVNEQKGPESKEETRKAFEFTVGHVGMDISAG
PLWFEYITFLKTMPISSPQEEAQRMLLLRKAYQQAVLSPIHHIEQLWKEYESFENTISRA
LAKGLVADFQPKHFNARAVYRERKKFWDQIDQSLLPVPFAGSFKEEQQNSSWKQLLAFEK
NNPQRLEPALLARRVVFTYEQCLMYFYHYPDIWYDYAMWLAQNGSNDNAAVVFGRALIAL
PDATIIYYAYAEFEEARGSIKDAKKIYETLVSHEKIANSLAHIQLMRFVRRTEGIEAARK
VFSEARKSPSCTYHLYVACAVMVFCVDKDPKVARDIFELGLKKYIHEPSYVTEYADFLCR
LNDDRNVRALFERALNVLPAEESVEVWNRFLAFEQMYGDIPSMLKVAQRRKEALTGDDGV
AVASSESSMQQLISRYRFLDLWPCSSQDLDHLAQQQIMLQKLEEKQLAIGNVQGAKKSQN
SAATPPKNLIRPDVSQMTPYDPKPAGNDALVLSGLGLQGSTAMPGLASRAGLGRGPADDS
SMEELLRLLPPAVKTFLSQLPPVDGPIPDVDLVISILLENEVPNPTGPNGSTKSAAATSG
RAGRHAKRKDLEAQEEDDAALQSQAAQSGPKDVFRMRQLQRSRAVSNASAKRLQQSSTSS
GLSAEKSVSN
NT seq
2373 nt
NT seq
+upstream
nt +downstream
nt
atgatcaacgatggaaagctcttcaaagctcagattcctgagagatcgctgctggcagct
ccagctgatggcgccgccgccgccgccgccgattcttcctcgccgtcgccgtctgggagt
tccagaagatcgctgtttagtcatctagggcctcccgcgagtgacaaggagcgcgcagct
cgagagcgaatcgatgcacagaagtacgatgtggaggcgtgggaaattcttgcggatgag
gcccagtctagaccgattgctcacgcgacgggaattttcgagctactcgtttctaccttt
ccaactgcggggaagttctggaagatgtacgcggaagctatgatcaaggcgagcaacgat
gatgcggtccggcatatctttagccgttgtttgctcagctgcttccatttagagctatgg
aaatgctacatcaagtttattcgcagagtgaatgaacagaaaggccctgaatcaaaagag
gaaacgaggaaagctttcgagttcacagtcggtcatgttggaatggacatatcagcagga
cctttgtggttcgagtacatcacattcctgaaaacgatgcccatttctagtcctcaggaa
gaggctcagcgaatgctcctgctccgcaaagcttatcagcaagctgtgctctccccgatc
catcacattgagcaactgtggaaagagtatgaaagcttcgagaacaccatcagccgggca
ctggcaaaaggacttgtggccgacttccagccaaagcacttcaatgctcgtgctgtctac
agggaacgaaagaagttctgggaccaaattgatcagagtttgctaccagttccttttgcc
ggttctttcaaagaagaacaacaaaattcttcgtggaagcaacttcttgcgtttgaaaag
aacaatcctcagcggttggagcctgctcttttggctagacgtgtggtgtttacttatgag
caatgccttatgtatttttaccattacccagatatttggtatgattatgcaatgtggctc
gctcaaaatggatcaaatgacaatgctgccgtagtttttgggagagctctcattgccttg
ccagatgcaacaatcatctattatgcttacgcagaatttgaagaagctagaggctccatc
aaggatgcgaagaagatttatgaaactcttgtgagtcatgaaaaaatagcaaattccttg
gctcatatacagctgatgcgtttcgtgaggagaaccgaaggcattgaggccgctcgcaag
gttttttccgaggcacgaaagagtccttcctgcacatatcatctttacgtggcgtgtgcc
gtaatggttttctgcgttgataaggacccaaaggtagcgcgagacatatttgagttagga
ttgaaaaagtacattcatgagcctagttacgtgacagagtatgctgactttctttgtcgt
ctaaacgacgacagaaatgtgcgagcactttttgagcgtgctctgaatgttcttccagca
gaagagtccgtagaagtatggaatcgatttttggcgtttgaacaaatgtatggtgacatt
ccgagcatgctgaaggtggcacaaagaaggaaagaagctttgactggagatgatggtgta
gcggtagcatcctcagaaagctcgatgcagcagctaatatctcgttaccgctttttggat
ctctggccttgttcatcacaggatctcgaccatctcgcgcagcaacagattatgttgcaa
aagctggaagagaaacagttggctattggtaacgtacaaggcgcgaagaagtctcagaac
tccgcagcgacacctccgaagaacttgattcggccagacgtatcgcaaatgactccgtat
gatcccaagccagcgggaaatgacgcccttgtgctgagtggtctgggacttcaaggttct
actgctatgcctggattggcctctcgtgcgggtcttggacgaggtcctgcggatgattct
tcaatggaagagctcttgaggctcttaccaccagcagtaaaaacttttcttagccagctt
ccacctgtcgatggacccattcccgatgtagacctggtgatatccatcctactcgagaat
gaagttcccaatcccacgggaccaaacggaagcacaaagtccgcagctgcaacatcagga
agagctggacgccacgcaaaacgcaaggacctcgaagctcaagaagaagacgacgcagcg
ttacagtcccaggcagctcaaagtggtccgaaggacgtgttccggatgcgccagctccag
aggtcgagagccgtgagcaacgccagcgccaaaaggctacaacagtcgtccacttcgagc
ggcttaagcgccgagaagtctgtaagtaattga
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