Selaginella moellendorffii: SELMODRAFT_37142
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Entry
SELMODRAFT_37142 CDS
T01496
Name
(RefSeq) hypothetical protein
KO
K03120
transcription initiation factor TFIID TATA-box-binding protein
Organism
smo
Selaginella moellendorffii
Pathway
smo03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
smo00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
SELMODRAFT_37142
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
smo03000
]
SELMODRAFT_37142
03021 Transcription machinery [BR:
smo03021
]
SELMODRAFT_37142
Transcription factors [BR:
smo03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
TATA-binding proteins
SELMODRAFT_37142
Transcription machinery [BR:
smo03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
SELMODRAFT_37142
RNA polymerase III system
TFIIIB
SELMODRAFT_37142
RNA polymerase I system
SL1/TIF-1B
SELMODRAFT_37142
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TBP
DUF3378
DUF4295
Motif
Other DBs
NCBI-GeneID:
9647391
NCBI-ProteinID:
XP_002981418
JGI:
37142
UniProt:
D8RF83
LinkDB
All DBs
Position
Unknown
AA seq
196 aa
AA seq
DB search
GFQGGVAVDLSKHPSGIVPTLQNIVATVNMDCKLELKTIALHARNAEYNPKRFAAVIMRI
REPKTTALIFASGKMVCTGAKSEQNCRLAARKYARIIQKLGFPSQFKDFKIQNIVGSCDV
RFPIRLEGLAFSHGHFSTYEPEIFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDEIYEA
FENIYPVLAEFRKIPQ
NT seq
591 nt
NT seq
+upstream
nt +downstream
nt
ggattccaaggcggcgtggctgttgacttgagcaagcatccgtcagggatcgttcccacg
ctccagaacatagtcgcgactgtgaacatggattgcaagctcgagctaaagacgatcgcg
ctgcatgcaaggaatgccgagtacaatcccaagcgttttgctgctgtgatcatgcgtata
agagaacccaaaaccacggctctcatctttgcgtccggaaagatggtgtgcactggggcc
aagagcgaacaaaattgcaggcttgcggctagaaagtacgctcggatcatccaaaagctt
ggctttcccagtcaattcaaggactttaagattcagaacatcgtgggatcgtgcgatgtc
cgatttccaatccggctcgaaggcctcgccttctcccacggccacttctcaacatacgag
ccggagatcttcccaggactcatttacagaatgaagcagcctaagatcgtcttgctcatc
ttcgtctctggcaaaatcgtgctcacgggagcaaaggtaagagacgagatctacgaagct
ttcgagaacatctaccccgtgctagcggaattccgaaagatcccacagtga
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integrated database retrieval system