Selaginella moellendorffii: SELMODRAFT_40134
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Entry
SELMODRAFT_40134 CDS
T01496
Name
(RefSeq) hypothetical protein
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
smo
Selaginella moellendorffii
Pathway
smo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SELMODRAFT_40134
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smo03019
]
SELMODRAFT_40134
03012 Translation factors [BR:
smo03012
]
SELMODRAFT_40134
Enzymes [BR:
smo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
SELMODRAFT_40134
Messenger RNA biogenesis [BR:
smo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
SELMODRAFT_40134
Translation factors [BR:
smo03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
SELMODRAFT_40134
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HA2_C
Helicase_C
OB_NTP_bind
DEAD
AAA_19
Ank_2
HA2_N
Ank_5
nSTAND3
AAA_22
ATPase
ABC_tran
AAA_7
AAA_29
Motif
Other DBs
NCBI-GeneID:
9644754
NCBI-ProteinID:
XP_002984623
JGI:
40134
UniProt:
D8SN06
LinkDB
All DBs
Position
Unknown
AA seq
908 aa
AA seq
DB search
LSNEPHSMQLTETTQKLPIWKFRDVITTTVDQNKVVIIAGETGCGKSTQVPQYLLDHMWG
QGKSCRVVCTQPRRISATSVADRIATERGEAIGETVGYQIRLESRGGPHSSLMFCTNGVL
LRKLVTAKEAGVSATHIIVDEIHERDCNADFLLIVLKGLLLAQPDLRLVLMSATLDAELF
SSYFNNCPVLKIPGFTHPVTVYYLEDVLSITNFEANARKLTAEPAADSLLLSEEDADEMD
NALTCAWLDDDFEQLLSLVTENPRPEVVDYQHSSTGITALMVAAGKGRVEDVGVLLLLGS
SCSLVSQEGQTALDMAESNGEEEAAETIREHIKQATEVQTAEKEAEILGKYHGSVDQEEV
DILLIERLLHTICSDPGDGAVLVFLPGWEDITRCRDQLMASPFYSDETRFLILPLHSMIP
MSDQKKIFTKPPPGARKIVLATNIAESAITIDDVVYVIDSGRMKEKSYDPYTNVSTFQTT
WVSKASARQRQGRAGRCRAGFCYHLFSKVRAASLADFQLPEMKRTPLEEVCLKVKLLQPR
GDVRDFLSSALDPPLDISIQNAMSLLQDIGALTPAGELSELGQQLGSLPVHPATSKMLLL
SILLNCLDPALTIACAAGYRDPFVLPMAPHLKREAFAAKNHLASKYGGYSDHLAVVAAFD
GWEAARKRGQEYSFCSQYSLSPGVMNMLDGMRKQLLRELTLKGFVKRDPRPCSLNAKDPG
IVRAILSACLYPSVARILPPDESGRKVIAQIARGEKVRIHPQSSNFRLLVQQQFPDLNVY
NDHLLVFEEVTRGESQVYIRNNTCVKPHPLLFFCTELSVAPLRSYREEEYEMAGPAEREL
MEAADDTLAMVIDRWLKYQTSSVMAAQVYCLRERLLSALLFKVKNPSANLPDMLAASVHA
LACVFSYE
NT seq
2724 nt
NT seq
+upstream
nt +downstream
nt
ttgtctaacgagcctcactcaatgcagctgacagagacgacgcaaaagcttccgatttgg
aagtttcgagatgttatcacgactactgtggatcaaaacaaggttgtcattatagcgggt
gaaacaggctgcggcaaatcaacacaagtccctcagtacttacttgatcatatgtggggg
caagggaaatcgtgccgggtggtatgtactcaacctcgtcgaatttctgctacttcagtt
gcggatcgtatcgcgactgagcgtggagaggctattggtgaaacggttggctatcagatc
cgactagaaagcagaggtggtcctcatagctccttaatgttttgtaccaatggggtactt
ctccggaagctcgtaacggcgaaagaagctggagtttcagcaacgcatatcattgtggac
gaaattcatgaacgagattgtaatgcggacttcttgcttatcgttctaaaaggattgtta
ttggctcagccagacctccgattggttctcatgagtgccactcttgatgcggaactgttc
tcttcgtattttaacaactgtccggttttgaagataccgggttttactcatccagtgacc
gtgtactacttggaggacgttctctccataaccaatttcgaggccaatgctagaaagctc
actgcggagcctgcggcagatagccttttgctcagcgaggaagatgcagatgagatggac
aacgcgttgacatgtgcttggttagatgatgactttgagcaacttctgagcttggtgacc
gagaatccaagacctgaagtcgtagattaccagcattcgtcgacaggtattacggcctta
atggttgcagctgggaaaggaagggtcgaagacgtcggcgtgcttctattattgggaagt
agctgctcgcttgtgtcacaagagggacagacagctttagacatggccgaaagtaacggg
gaagaggaggctgcagaaacgataagggaacacatcaaacaggcaacagaagtccaaact
gcagaaaaggaagccgaaattcttgggaagtaccacggctctgtggatcaagaagaagta
gacattcttctgatcgagcgtctactccatactatctgtagtgatcctggggacggagct
gttttagtgtttcttcctggctgggaggatattacgagatgcagagaccagctgatggcg
tcaccattttacagcgacgaaaccaggttcctcatattacctctgcattcgatgattcct
atgagcgaccaaaagaagatttttacgaagccaccgcccggcgcgagaaagattgtcttg
gcaaccaacattgctgagagcgccatcaccattgacgacgttgtctacgtgattgatagc
gggaggatgaaggagaaaagctatgatccttatacaaacgtctctactttccagacaacg
tgggtttcaaaggcaagtgcacgacaacggcagggacgcgcaggtcgctgccgtgcgggc
ttctgctatcatttgttctccaaagtacgtgctgcatccttggccgactttcaacttcct
gagatgaaacgaactcctctggaagaagtttgtttgaaggtaaagcttctccagccgcgt
ggtgatgtaagggatttcttgtcgagtgctttggatccaccactcgacatatccatccag
aacgctatgtcactactccaagacattggtgcacttacacctgcgggagagcttagtgaa
cttggacaacaacttggctcgttgcctgttcatccagctacgagcaagatgctgctgctg
tcgatactactcaactgcctggatccagcacttactatcgcctgtgcagccggataccga
gacccttttgtgctacctatggctccgcacctgaagagagaggcttttgctgcaaaaaat
catctggcttcaaagtacgggggatacagtgatcatttagcagtcgttgctgcgttcgac
ggatgggaagcggcgagaaaaaggggtcaggagtatagtttctgctcgcagtacagttta
tcaccaggtgttatgaacatgctggacggaatgagaaagcaactactcagagagctgacg
ttgaaggggttcgtcaagagagatccgcggccatgcagcttgaatgcaaaggatccaggc
attgtccgagcaatactctccgcttgcttatatccgtccgtggcaagaattctgccccct
gatgaaagtggtcggaaggttattgctcagatagccaggggcgagaaggttcggatccat
cctcagtcatcgaactttcgactgttggttcagcagcagttcccggatcttaacgtttac
aacgaccaccttcttgtttttgaagaagtcactcgcggagaatctcaggtgtatatcaga
aacaacacttgcgtcaagcctcatccacttttgtttttctgcaccgagctgtccgtggcg
cctcttagatcttaccgagaggaagagtatgagatggctggtcctgccgagagggagctt
atggaggctgcggacgacacactggcaatggtgatagatcgatggctaaagtatcagacg
tcgtcggtcatggcggcacaggtttattgtctgcgcgaacggcttttatcggctttgctc
tttaaggtgaagaatccgagtgccaacttaccggatatgctcgctgcgtccgtgcatgca
ctcgcctgcgttttctcatacgaa
DBGET
integrated database retrieval system
