Selaginella moellendorffii: SELMODRAFT_408296
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Entry
SELMODRAFT_408296 CDS
T01496
Name
(RefSeq) hypothetical protein
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
smo
Selaginella moellendorffii
Pathway
smo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SELMODRAFT_408296
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smo03019
]
SELMODRAFT_408296
03400 DNA repair and recombination proteins [BR:
smo03400
]
SELMODRAFT_408296
Enzymes [BR:
smo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SELMODRAFT_408296
Messenger RNA biogenesis [BR:
smo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SELMODRAFT_408296
DNA repair and recombination proteins [BR:
smo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
SELMODRAFT_408296
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
RQC
Helicase_C
HTH_40
RecQ_Zn_bind
HRDC
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
9635369
NCBI-ProteinID:
XP_002966994
JGI:
408296
UniProt:
D8R7U6
LinkDB
All DBs
Position
Unknown
AA seq
901 aa
AA seq
DB search
MERCLKDYFGYSSFRPFQKEVIQQILRGRDCLVVMATGSGKSICYQIPPLVSSKTAVVIS
PLISLMQDQVMGLKLRGIKAEYLGSAQTDKTVEDKAGRGEYDILYMTPEKACGTTWTSLL
SRGVSLLAVDEAHCISEWGHDFRPEYQRLSSIRSKLPEVPFVALTATATHKVREDILKSL
MLKNAYIAVSSFDRSNIFYGVKPLTRSNAFREELATEVVKDLEQGGSTIVYCNTIKDVDE
VTNALVKAGAAARAYHSKLGLKERNDVHRTFLKDELQVVVATVAFGMGIDKPDIRRVIHY
GCPKSLESYYQESGRCGRDGLPSACWLYFTRADFTRAEYYTSEVRTQERKKAVADAFAAS
QGYCTTTTCRRKFILQYFGEFTKNDNCGNCDNCTKTAAQRRDMVQEAYAILAAVKLCGGF
WGMNMPIDVLRGSLAKKVVERGYEKLHVHGLGREKTATWWKALGDQLLSLGYLRETREKF
RTVSVSQKGQRFLEELPNGASLVLPVTEEMLREEKSSAPDTATASTPGPTLNGLPEVEMK
LFKALIDLRAEIADKSSTAPYMICNERTLQRITNTRPSNIVRLRNVEGINQWLVTEYGEA
FLECVKRICQETGLEQDKESIVQKAAASRTSDRSMLTPAKSEAWSMWHEKKMSFFEIANL
PERPRPIKEDTVIEYILECLRAGCEADWSRFFDETGMTTCIREQIRAAIGKVGSREKMKP
LKENLPETVSYAHIKIYLLAEELGVDLGLSPNVDTQDRNVEVIDLDEEPRNESIDRPPWL
DIRTKTSTKPRRLDVEELANGECKKMRTAESRQATDEGIMEWLLSRDGATLKEISSRFSD
TDDDIKLTTTWQCSPILFSEMSAARSTNETGPELETRPSSATDVSSTRMTVNSTSLSGSD
T
NT seq
2706 nt
NT seq
+upstream
nt +downstream
nt
atggagcgctgcctcaaggattattttggctattcatcgtttcgtccgtttcaaaaggag
gtgatacagcagatattgcgtgggagggattgtcttgttgtgatggctactggcagcggc
aaatcgatctgctaccaaattccgcccctcgtgagcagcaaaaccgccgttgttatcagc
cccttgatcagtttgatgcaagatcaggtaatggggctgaagctacgtggtatcaaagcg
gaatacctgggcagtgctcagactgataagactgtagaagataaagccggaaggggagag
tatgatatcctttacatgactccagagaaggcctgtggaactacgtggacctcgctgctg
agtcgtggtgtttctttgttggctgttgacgaggcgcattgcatctcagaatggggacac
gacttcaggccggagtaccagcggcttagttcgatcagatcgaagcttcccgaggttcca
ttcgttgcactgactgccaccgccacacataaggtgcgggaggacatattaaaatcgctc
atgcttaaaaatgcctacatagccgtttcttcgtttgatcggtcaaatatcttctatggt
gtgaagccattgactaggtccaatgccttccgcgaagagcttgccactgaagttgtgaag
gacttagaacagggaggctccactatcgtgtattgcaacactatcaaggatgtagatgag
gtcacaaacgccttggtgaaagcaggtgccgctgcacgagcataccacagcaagctcgga
ctcaaggaaaggaacgatgttcacaggactttcctgaaagatgaacttcaagttgtggtt
gcgactgttgcctttggaatgggcattgataaaccggatatacgaagagtgatacattat
ggctgtccaaaatccttggagtcttattaccaggagagtggtaggtgcggtagagatggt
ttgccatcagcatgctggctatattttacgcgtgctgactttacgcgagcggaatattac
acttcggaagttcgcacgcaagaacggaagaaagcggtggcagatgccttcgcagcttcg
caaggatattgcacaacgacaacctgccggcggaaatttattttgcaatacttcggggag
tttacaaagaacgacaactgtggaaactgtgataactgtaccaagactgctgctcaacgg
cgcgatatggtgcaggaggcttacgcaattttggcagctgtcaaattatgtggaggcttt
tgggggatgaatatgcctattgatgttttaagaggctctcttgctaagaaagtcgtggag
cgaggttacgaaaagcttcatgttcatggcctcggtcgcgaaaagactgctacttggtgg
aaagcgcttggagatcagcttctatccttgggttatttaagagagacgcgagaaaaattc
aggactgtgagcgtgtcacagaagggacagcggtttttggaggagctgccgaatggagca
tcacttgtattacctgtcacggaggaaatgcttcgagaagagaaaagtagtgcacctgat
acggctactgcgagtacgccagggcccactttgaatggattgccggaggtggaaatgaaa
ttatttaaggcactcatagacttgagagcggaaattgctgacaagagttcaactgcccca
tacatgatatgcaacgagcggaccttgcagaggatcacaaacactaggccttcgaatatc
gtacgtttacgaaatgtcgaaggcataaatcagtggcttgttacggaatatggtgaagca
tttctcgagtgcgttaagcgcatttgtcaagaaaccggattggaacaagacaaggaaagc
attgtgcagaaggctgctgcttctaggacctcggatcggtctatgttgactccagcaaag
tctgaagcatggagcatgtggcatgaaaagaaaatgtcattctttgagattgcgaatctt
ccggagcgtcctaggccaattaaagaagatacagttattgagtacatattagagtgcctt
cgtgctggatgcgaagctgattggagtcgcttcttcgacgagacaggcatgactacttgc
attagagaacagattcgagctgcaattggtaaagtgggatcgagagagaagatgaaacct
ctgaaagagaatctaccagaaacggtctcttatgctcatatcaaaatctatttacttgcg
gaagaactaggagtggatttgggccttagtcctaacgtggatactcaagaccgcaatgtc
gaggttatagatctcgatgaagaaccgcgcaacgaatccatagaccgtcctccatggctc
gacattcgtactaaaacttcgacaaagccgagacgtttagacgtggaggaactggcgaat
ggcgagtgcaagaagatgcgcactgccgaaagcaggcaagcgacggacgaaggtataatg
gagtggctcctttcacgtgatggggccaccctgaaggaaatcagttcccggttttctgac
acagacgatgacatcaagcttacaacaacgtggcagtgctccccgatattattttccgaa
atgtcggcggcaaggtcaacaaacgagacgggtccagagttagaaacccgtccttccagc
gccacagatgtttcgtcaacgaggatgactgtgaacagcacaagcctgtcaggatccgac
acgtga
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