Selaginella moellendorffii: SELMODRAFT_408754
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Entry
SELMODRAFT_408754 CDS
T01496
Name
(RefSeq) hypothetical protein
KO
K15362
fanconi anemia group J protein [EC:
5.6.2.3
]
Organism
smo
Selaginella moellendorffii
Pathway
smo03440
Homologous recombination
smo03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
smo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
SELMODRAFT_408754
03460 Fanconi anemia pathway
SELMODRAFT_408754
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
smo03400
]
SELMODRAFT_408754
Enzymes [BR:
smo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
SELMODRAFT_408754
DNA repair and recombination proteins [BR:
smo03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
SELMODRAFT_408754
FA (Fanconi anemia) pathway
Downstream FA components
SELMODRAFT_408754
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD_2
Helicase_C_2
DEAD
CBP_BcsF
HBB
Motif
Other DBs
NCBI-GeneID:
9632835
NCBI-ProteinID:
XP_002967609
JGI:
408754
UniProt:
D8R9V1
LinkDB
All DBs
Position
Unknown
AA seq
1004 aa
AA seq
DB search
MEAQQYVYQICGVKVEFPYRAYGSQLAFMGKVITTLERAFRDPDGHCNALLESPTGSGKS
LSLLCAALAWQQHRMVAAASIGPATQFGGGFIPEGPASGAEDKHQAKKNKPPTIFFATRT
HSQISQIVHELKKTNYRVPMAILAARKHYCTNQHVCKKANLDDECKVLLKDPHKACPQFK
NVNKLKHHPALRKGGCHETHDIEDLVTLARSVRGCAYFTSRIMAADAQIVFCPYSYILSP
IFRKAMDVDIRGAIIIFDEAHNIEDMSREAGSVDLDTSILEASSEELRNELEELSSSEDS
HDLYRPLFDMVQELLIWIRQQDENLQRKEVDHYYSNWTGPKGLEQLQAAGISSESFSIQL
DCAVKAAGAASDPDPEKPHLSGRCASAMEGLFCALKFMLSKPEYIHDYQIVVQRVLNKVE
GTDEWLHKLSFWCLNPGVVFNEIATICKSVVLTSGTLSPMGSFASELGTSFEMVMEAPHI
IDLNSQLLVSAVSFGPGNVPLNASYQYANTVAFQDALGTALEQICNIVPDGALVFFPSYK
LLQRVCNRWKTTGQWKRILDIKSVFVEPQGSTGKFEDILKDFYKVIKGENVEPSRRKRIL
TPKNFTSAGGQTGAAFLAVCRGKVVVGIPFPNLNDVQVAMKKNYNDNQKTLKSLLGGDQW
NVTGRCIRHRGDYGAIVLLDERFNKANYTGYMSKWLRKSIMRPASFQEALRDLQAFFSKF
ENTGSTKKCSSVISSITTTPLPGGGVKSCSLVRERQPELEDVIKLSSCCGPWFDSNAYPS
ANLSTPRITSLNNVSQVPETANFSSPVQVPVLTDNLMTMATRFDTSKDVKNLCCRKCGHH
LSAYDNPRATYQLETLEKKYLASLAMTATPLLRVIIMEAQHLHSYLNDNPGGQAFRERNA
CSSGVWIEEDGCVFKPIVCGWCTDLDVCLGAHILAADPANMKYAGKVVLFLDSIETSDCS
PKQVEQTQFSVDTPVLKRPLVTSLTATGKEYAQLLAWTTNWRCQ
NT seq
3015 nt
NT seq
+upstream
nt +downstream
nt
atggaggctcagcagtatgtctatcaaatctgtggagtcaaggtcgagtttccatacagg
gcctatggatcgcagctcgcctttatgggaaaggttataaccacactggagagggctttc
cgggatccagacggccactgcaatgcgctcttggaatctcctaccgggtctggcaagtcc
ttgtctttgctgtgcgcggccttggcgtggcagcagcaccgaatggtagcagcagcttcg
attggtcctgctacgcagtttggtggtggttttattcccgagggaccagcttcaggtgcc
gaggataagcaccaagcaaagaaaaacaagccacctacaatttttttcgcaacgaggaca
cattcgcaaatctctcagattgtgcacgagctgaaaaagacgaactatcgtgttccaatg
gctatattggctgcaaggaaacactattgcacaaatcaacacgtgtgcaagaaggcaaac
ttggacgatgaatgtaaagtgcttctgaaggatccacacaaagcctgccctcagtttaaa
aatgtgaataaattgaagcatcacccggcgctacgcaaaggaggatgccatgaaactcat
gacattgaagatctggtgaccttggctcgttcagttagaggatgcgcatacttcacttcg
agaataatggctgcagatgcccagattgtcttctgtccatacagttacattcttagtcca
atatttcgaaaagcgatggacgttgatattcggggagctattatcatttttgacgaggct
cataacatcgaagacatgtcacgggaagccggtagtgttgacttggatacaagcattcta
gaagcttcttctgaagaactccgaaatgaactcgaggaactaagctcgtccgaagactca
catgatctgtaccgtcctttgtttgatatggtccaggaacttctcatttggatacggcag
caggatgagaatcttcagaggaaggaagtcgaccactattattcgaactggacaggtccg
aagggactagaacaactccaagctgctgggatttcatctgaatcgttttctatacagtta
gactgtgctgtgaaggctgcgggagctgcatccgatccagatccagaaaagcctcatctg
agtggacgttgtgcaagtgcaatggaaggtctcttttgtgcgctgaagttcatgctgtca
aaaccggaatacattcacgactatcagatagtggtgcagagggtcttaaacaaagtcgaa
ggtactgacgaatggctacacaaactgagcttctggtgcctgaatccaggggttgttttt
aacgagattgcaacaatttgcaagtctgtcgtacttacgtctgggactttgtccccaatg
ggttcgtttgcttcggaacttggcacttccttcgaaatggttatggaagcgccgcatatc
atagacttaaactcacagctgcttgtgtctgctgtttccttcggtccaggaaatgtaccg
ctcaatgcaagctaccaatatgcaaacacagtcgcttttcaagatgccctgggaactgcg
ttggagcaaatatgcaatatagttccggatggcgccctcgtgttttttccaagctataag
cttttacaacgagtctgcaacagatggaaaactactggtcagtggaagagaattttggac
attaaaagtgttttcgttgagccgcaaggaagcactgggaagtttgaagacattttgaag
gatttttacaaggttatcaagggagaaaatgtagagccttccagacggaaaagaatccta
acgccgaagaacttcacttccgcaggtggtcagactggagctgcctttctcgcagtctgc
aggggaaaggtggtcgttggtattccttttccaaatctaaatgacgtccaagtcgctatg
aaaaagaactataacgacaaccagaaaactcttaaaagtcttctaggtggtgatcaatgg
aatgtcacaggtcgttgcattagacaccgtggtgactatggtgcaattgtgctgttagat
gagcggtttaataaggcaaattataccggttatatgtccaagtggttaagaaagtctatc
atgagaccggcaagttttcaggaagctctaagggatttacaagcctttttcagcaagttt
gagaatactggctctacgaagaaatgctcttcggtgatctcatccatcacgacaacaccc
ttgcctggaggcggcgtcaaatcctgctcccttgtgcgtgaacgacaacctgaactcgag
gatgttatcaagctgtcctcatgctgcggtccatggttcgattcaaatgcttatccatct
gcaaatttatcaactcccagaatcaccagtctaaacaacgtgtctcaggtcccggaaacg
gctaatttttcatcacctgtacaagtgccagttttgacggacaaccttatgaccatggca
actcgtttcgacacttcaaaagacgtcaagaacctctgttgccgcaaatgtggccaccac
ttaagtgcctatgacaacccgagagcaacgtatcaattggaaacactagagaagaagtat
ctagcatcactcgcaatgactgcaacgcctctgttgcgagtgatcatcatggaggcccag
catctgcacagctacctcaacgataatcccggtggacaagcttttcgggagagaaatgcg
tgttcttctggggtatggatcgaagaggatggttgcgtgttcaagcctattgtatgtggc
tggtgcacggacttggacgtctgtttgggcgctcacatcttggctgcagatcctgcaaat
atgaaatacgctggaaaggtcgttttgttcttggattccattgaaacttctgattgcagt
ccaaagcaagttgagcagactcagttttcagttgacactcctgtactaaagaggccactc
gtaacctcattgactgcaacgggaaaggaatatgcgcagcttttagcgtggacaacgaac
tggagatgtcaataa
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integrated database retrieval system
