Selaginella moellendorffii: SELMODRAFT_409247
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Entry
SELMODRAFT_409247 CDS
T01496
Name
(RefSeq) hypothetical protein
KO
K10143
E3 ubiquitin-protein ligase RFWD2 [EC:
2.3.2.27
]
Organism
smo
Selaginella moellendorffii
Pathway
smo04120
Ubiquitin mediated proteolysis
smo04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
smo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
SELMODRAFT_409247
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
SELMODRAFT_409247
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
smo04121
]
SELMODRAFT_409247
Enzymes [BR:
smo01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
SELMODRAFT_409247
Ubiquitin system [BR:
smo04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
SELMODRAFT_409247
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
SELMODRAFT_409247
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_CDC20-Fz
WD40
Beta-prop_TEP1_2nd
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
WDR55
Beta-prop_RIG_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_C
Beta-prop_EIPR1
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_WDR19_1st
Beta-prop_DCAF12
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR75_1st
WD40_RFWD3
Beta-prop_SCAP
Motif
Other DBs
NCBI-GeneID:
9631265
NCBI-ProteinID:
XP_002968121
JGI:
409247
UniProt:
D8RAU8
LinkDB
All DBs
Position
Unknown
AA seq
499 aa
AA seq
DB search
MVVGGHPTARETFSRVRNFAVTGGMIFWKKWRRRWNSCSVEVSNGAIGQRGGGGGTLLCI
PSDTLADDKRLKKRSRRLLVSDSTGESHNNAKRSAAMYSTAFNFKLSGTTKTYPGTSTTN
SSLDRSVDSSGMPEPEPCDQSKHETWEFETLVPFSCETPSLLSSDVISTIDYDETGQLIA
TGGLARKIRICSYQELVNGMGRECFQGRNVKNLFTTICMPAKLSSLKWRPGSSEVIACGD
YDGSVTEWDVEHGVTVSERYEHTGRTVWSIDYCRDFRGLLASASSDSTVRFWSRNVERSV
GIIKSLKRNSMCCVEFGRSSGPCCYVAVACADASVYLYDMRSLGSPVANLRGHERSVSYV
RWLGENSLVSSSPDGTIRLWDIASTLTGTGESWHARNDELPIARTFGCHSNTRNFVGLSV
ASSGGGSGGLIASGSENNEVFVYSSSVSERPVFRHKFNDAVVLDDKAFVGSVCWTKQEDH
LSLISANSEGIVQEWLFHT
NT seq
1500 nt
NT seq
+upstream
nt +downstream
nt
atggtggttggcggtcatccaacggccagggagacgttctccagagttcgaaattttgcg
gtgactggcggaatgatcttctggaagaaatggaggcggcgctggaattcctgctcggtt
gaggtgtccaatggagcaatcgggcagagaggaggcggtggaggaacgctgctttgcatt
cccagcgacacgctcgcagatgataaacggctgaagaaacgttcgcgcaggctgctcgtc
tcggatagcactggcgagtcccacaacaatgcgaagcgatcggcagcaatgtactccaca
gctttcaacttcaagctctcggggaccacgaaaacttatcccgggaccagcactaccaac
agctctttggaccggtcagtggattcatcgggaatgccggagccggagccgtgtgatcag
tccaagcacgaaacgtgggagtttgagacgctggtcccgtttagctgcgaaacgccatcg
ctgctgtcgtcggacgtgatctccacgatcgactacgatgaaaccggacagctgatagct
actggtgggctggcaaggaagatcaggatttgctcgtaccaggagctagtgaacgggatg
ggaagggagtgtttccagggacgcaacgtgaaaaacctcttcaccaccatttgcatgccg
gcaaagctaagcagtctcaagtggaggccggggagctccgaggtgatcgcttgcggtgac
tacgatggctcggtcacggagtgggacgtagagcacggggtcacggtgagtgaaagatac
gagcacacgggacgaacagtgtggagcatcgactactgcagagacttccggggcctgcta
gcgtcggcgtcgagcgacagcaccgtgaggttttggagcaggaatgtggagcggagcgtt
gggatcatcaagtcccttaagcggaactcgatgtgctgcgtggagttcggccgctcctcc
ggtccctgctgctacgttgccgtggcctgcgccgacgcgagtgtgtatctgtatgatatg
cggagcctggggagcccagtcgcgaacctgcggggccacgagaggtccgtgagctacgtg
agatggctgggcgagaacagcttggtgtcctcgtctccagacggcacgattcgactgtgg
gatatcgcctcgacactaactggtaccggcgagagttggcacgctcggaacgacgagctg
ccgatcgcgagaacctttggctgtcactccaacaccaggaactttgttggactgtctgtt
gcgagctccggcggcggctccggcgggctcatcgcgtccgggtccgagaacaacgaagtc
tttgtgtacagctcttccgtctcggagagacccgtcttccggcacaagttcaacgatgcg
gtcgtgctggatgataaggccttcgtggggtcggtttgctggaccaagcaagaagatcac
ttgtccttgatctcggcaaactccgagggcattgtgcaggagtggctatttcatacgtag
DBGET
integrated database retrieval system