Selaginella moellendorffii: SELMODRAFT_410528
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Entry
SELMODRAFT_410528 CDS
T01496
Name
(RefSeq) hypothetical protein
KO
K13114
pinin
Organism
smo
Selaginella moellendorffii
Pathway
smo03013
Nucleocytoplasmic transport
smo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
smo00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
SELMODRAFT_410528
03015 mRNA surveillance pathway
SELMODRAFT_410528
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smo03019
]
SELMODRAFT_410528
03041 Spliceosome [BR:
smo03041
]
SELMODRAFT_410528
Messenger RNA biogenesis [BR:
smo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
SELMODRAFT_410528
Spliceosome [BR:
smo03041
]
Complex C
Other components
EJC/TREX
SELMODRAFT_410528
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pinin_SDK_memA
RSB_motif
TSC22
Nucleopor_Nup85
Motif
Other DBs
NCBI-GeneID:
9645879
NCBI-ProteinID:
XP_002969666
JGI:
410528
UniProt:
D8RF14
LinkDB
All DBs
Position
Unknown
AA seq
358 aa
AA seq
DB search
MASAAVDKTVDELRHEIAELYRQNREINERLNNPRGRRLGRGGFSRAVGGRGGGRGGRTR
KADGDLEGPPTKRLHSVVKVNGDSVEAHTKETGTSSPRGRRREPFLTGQAQEFRTEPVPK
TVSKVDDPKLAKRNRRMFGALLGTLEKFRKEEMSNSESVMRRSDSLKRAVQKAQEESDKL
RQEEREHLTERRKRDLMLRAKISAKAEEKQIELLERAIDCSFYLRTKAEPGIHYLPVKQT
ERDKHQLEEQRKAFEEWKVKCREELDEYQKQITETFLAKAQADIDRVVAARNRKRIQFEG
GDKELEEEAAGGNLGEQIDNENEELQDEQGQEEEVADVMEEEDYRPEDDTTLPEGKSS
NT seq
1077 nt
NT seq
+upstream
nt +downstream
nt
atggcgagtgcggcagtggacaagacggtggacgagctgcggcacgaaattgcggagctc
taccggcagaatcgagagataaatgagaggctaaacaatccaagaggaaggcggcttgga
aggggtggattttcgagagctgtaggcgggcgagggggcggtcgaggaggaagaaccaga
aaggctgatggtgatttggaaggtcctccaacgaagagactacattctgttgttaaggtt
aatggtgattcggtcgaagctcatacaaaagaaactggcacgtcttccccccgtggacga
agaagagagccctttcttacagggcaggcgcaagaatttagaaccgagccagttcccaaa
actgtttcgaaagtggacgaccccaaacttgcaaagcgaaacaggagaatgtttggcgct
cttctgggaactttagagaaattcagaaaggaagagatgtcaaactcggaatcagtgatg
cggaggtcggactctctcaaaagagctgtacaaaaggctcaagaagaaagcgataagttg
cgacaagaggagcgggagcacctaacggaaaggcgaaaacgtgatttgatgcttcgagct
aaaatctctgccaaggcggaagaaaagcaaatcgagctgcttgaacgagcgattgactgt
tcattttatctcaggacaaaagcagaaccaggaatacattatcttccagtaaagcaaaca
gagcgtgacaaacaccaactggaggagcaacgaaaggctttcgaagaatggaaggtaaag
tgccgggaagagctggacgagtaccagaagcaaataaccgagacgtttctggccaaagct
caggcagacattgatagagtcgtggctgctcgaaacaggaagaggatccaattcgagggc
ggtgacaaagagctggaagaagaagccgccggtggcaatctaggcgagcaaatcgataac
gagaacgaagagctccaggacgaacagggccaagaggaagaagtggcggacgtgatggaa
gaagaggattataggccggaagatgatacaacgctcccggaaggaaaatctagctga
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