Selaginella moellendorffii: SELMODRAFT_412612
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Entry
SELMODRAFT_412612 CDS
T01496
Symbol
CHR25-1
Name
(RefSeq) hypothetical protein
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
smo
Selaginella moellendorffii
Pathway
smo03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
smo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
SELMODRAFT_412612 (CHR25-1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
smo03400
]
SELMODRAFT_412612 (CHR25-1)
DNA repair and recombination proteins [BR:
smo03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
SELMODRAFT_412612 (CHR25-1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
zf-RING_2
zf-RING_11
zf-rbx1
ResIII
HDA2-3
DEAD
zf-C3HC4_2
zf-RING_UBOX
zf-ANAPC11
SLFN-g3_helicase
DUF7231
zf-RING_5
zf-C3HC4
Motif
Other DBs
NCBI-GeneID:
9640489
NCBI-ProteinID:
XP_002972110
JGI:
412612
UniProt:
D8RM23
LinkDB
All DBs
Position
Unknown
AA seq
1011 aa
AA seq
DB search
MDDEDFQLEDDEEEEEGVEDLATPENRKSENVAALLRGDLVVKRQALIPKVLTVTDGAAV
IRRPFKSPCPGGQSNSDELLRRLSARKRFVPWKRQPLLPLSPNVETLPIQEDPSEGSVEL
PDDFEPLVLWQPDGNEDGATIVVDPIVAKFLRPHQREGVQFMFECVTGLREFSKAGDAAW
SGCILADDMGLGKTLQSITLLWTLLRQGFQGSPIAKRIIIVTPTSLILIISYETFRLHAG
KFQKEGACDLLICDEAHRLKNDHTLTNQALASLQCHRRVLLSGTPMQNDLEEFYAMVNFT
NPGILGEVAAFRRYYQNPILRGREPEATEDARKLGLERSAELSEKVNQFILRRTNALLSN
HLPPKIVEVVCCKLTNLQRELYTHFIHSKNVRLALQDKAKRARVLASITALKKLCSHPKL
IYDTVRAGGSEAAGFENCMQFFPKEMQTGRGTPSDGSWVKLSGKMFVLARLLENLRKKTN
DRIVLVSNYTQTLDLFAQLCRERNYPYVRLDGSTSIGKRQKLVQKFNDPSQNEFAFLLSS
KAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVYIYRFLATGTIEEKVYQ
RQMSKEGLQKVISGDSKAEVNALSTEDLRDLFTLRDISSDTHDTLDCERCDVENVPNELA
NQLGDIGAFAKTAGCLERQRHWEKQIGEPAEEDLIRWAHHSHPSTVPDVILQWAAGEEVS
FVFTCQIDGKVVPIDSILPSAAAEEERDSTRTARTTLPTFAQKRKLDKSVLQAACLRSPK
RVCIDLEDRDDVKAIQPDATVWFGLRGQIPQCVALCNDDRLMLLFNSGVSSTLSQLALLM
TWSPNSLLDAGLTSLAKGKNARPEIFVATLLVPGNRSAHGGDCLLHPLRIHAAVAAHLLL
RVQVQEEGQELVGAGGGGFQSRLGLSKDLVKRLPVVSYEQLVKIKSGEENVECCAVCLIE
FGKGDSEIRHLPRCGHCFHTDCIDMWFFSHSSCPICRDSLQKEPLLEVVST
NT seq
3036 nt
NT seq
+upstream
nt +downstream
nt
atggacgatgaagatttccagctcgaggacgatgaggaggaagaagaaggggtagaagat
cttgccacgccagagaacaggaagtccgagaatgtggcagcgctactgaggggagacttg
gttgtgaagcgacaggcattgattccaaaggttctcactgtcacagacggcgctgccgtg
atcaggaggcctttcaagtccccgtgtcctggcgggcagagcaacagtgacgagctgctt
cggcgcctctccgcaaggaaaagatttgttccttggaagagacagcctctacttcccttg
agtcccaatgttgagacgctgccgattcaagaggatcccagtgaagggagtgtagagctt
ccggatgacttcgagcctttggtgctgtggcagcctgatggaaacgaggatggtgcgact
atagtggtcgatccaattgtcgcgaagttccttcgaccacatcaaagggaaggcgtccag
ttcatgtttgagtgtgtaactggccttcgcgagttctcaaaagctggcgatgcggcttgg
tctggatgcattctcgctgatgacatggggcttgggaaaacgttgcagtctataacgctt
ctttggacattattgagacaaggtttccaaggatcgccaatagctaagcggattatcatt
gtcactcccaccagtctgattcttataatttcatacgaaacctttagattgcatgcgggc
aagtttcagaaagaaggtgcttgtgatcttcttatttgtgacgaagcacacaggctgaag
aacgaccacactctaacaaatcaagcacttgctagtcttcagtgccataggagagttcta
ctttctggcactccaatgcagaatgatctagaagagttttacgctatggtgaattttacg
aatcctggcattctaggcgaggtggctgcatttcgccggtattatcagaatcctattctt
cgcggtcgtgagcctgaggctacagaagacgcaagaaaactaggattggagcgctctgcg
gagctaagcgagaaagtcaatcaattcatacttcggcgtacgaatgcacttttgtccaac
catcttcctcccaagatcgtggaggtagtttgctgcaagctgacaaacctgcaacgagag
ctgtatacacactttatacactcaaagaatgtccgtctggcattgcaagacaaagcaaaa
cgtgctcgtgtccttgcatcaattacggctttgaaaaagctttgcagccatccaaagctg
atatatgacactgttcgtgcgggcggatcagaagccgctggctttgagaattgcatgcaa
ttttttccgaaggagatgcagactggaagagggactccttccgacggaagctgggttaag
ttgtctggaaaaatgtttgttctagctcgtctactggagaatctacggaagaaaacaaac
gataggatcgtgcttgtatcgaattatacacagaccttggatctctttgctcaactctgt
cgagaacggaactatccctatgtaaggcttgatggaagtacgtcgattgggaaaaggcaa
aagctggtgcaaaagttcaatgatccgtcacagaacgaattcgctttcctactgagtagc
aaggccggtggatgtggattaaacttgattggcggcaaccggctggttctatttgatcct
gattggaatccggcaaatgacaaacaggcagcagcgcgtgtttggagagatggccaaaag
aagcgtgtgtacatctatcgatttttagcaactggtacaatcgaagagaaggtttatcag
cgtcaaatgtcgaaggaaggacttcaaaaggtgatcagtggcgactccaaagctgaggtc
aacgcgctatccacagaagatttgagggatctgttcacccttcgcgacataagttctgat
acacatgacacgcttgattgtgaacgttgcgatgttgaaaatgttccaaatgaactagct
aatcaactaggtgatataggcgctttcgctaagactgccggctgtctggagaggcaaagg
cattgggagaaacagataggtgagcctgccgaagaggacctgatacgctgggctcaccat
tcgcacccatcaacagtccctgatgtcatcttgcaatgggctgctggtgaagaggtttca
ttcgtttttacgtgccaaatcgatggtaaagtagttcctatagactcgattttaccatca
gctgccgccgaggaggagagagattctacgagaacggctagaaccacgctgccgacgttc
gcgcaaaaaagaaagcttgacaagtcagtattacaagccgcctgtttgcgttcgccgaag
agggtctgcatcgatttagaagatcgagacgacgtaaaagctatccagccagacgctaca
gtttggtttggtttgagggggcagattcctcagtgtgtggctctctgcaacgatgaccga
ctaatgctactgtttaactccggtgtcagctcaacactaagtcagcttgcgctcctaatg
acctggagccccaattctctcctcgacgcgggactgacaagcttggcgaaagggaagaat
gcaagacccgagatcttcgtcgccactctcctcgtccctggcaaccgatcggctcacggt
ggtgattgtctgctccatcctcttcgcattcatgctgctgtcgctgctcatcttcttcta
cgcgtgcaagtacaggaggagggacaggaactcgttggtgctggtggtggcggcttccag
tccaggctgggactctccaaggatctagtgaagcggctgccggtggtgagctacgagcag
ctggtgaagatcaagagcggcgaagagaatgtcgagtgctgcgccgtgtgcttgatcgag
tttgggaagggagactcggagattcggcacctcccgcgctgcggccactgcttccacact
gactgcatcgacatgtggttcttctcgcacagctcctgcccgatttgccgcgacagtttg
caaaaggaaccgctgctcgaggtggtttccacctga
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