KEGG   Selaginella moellendorffii: SELMODRAFT_418040
Entry
SELMODRAFT_418040 CDS       T01496                                 
Name
(RefSeq) hypothetical protein
  KO
K10843  DNA excision repair protein ERCC-3 [EC:5.6.2.4]
Organism
smo  Selaginella moellendorffii
Pathway
smo03022  Basal transcription factors
smo03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:smo00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    SELMODRAFT_418040
  09124 Replication and repair
   03420 Nucleotide excision repair
    SELMODRAFT_418040
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:smo03021]
    SELMODRAFT_418040
   03400 DNA repair and recombination proteins [BR:smo03400]
    SELMODRAFT_418040
Enzymes [BR:smo01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     SELMODRAFT_418040
Transcription machinery [BR:smo03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     SELMODRAFT_418040
DNA repair and recombination proteins [BR:smo03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     SELMODRAFT_418040
SSDB
Motif
Pfam: ERCC3_RAD25_C Helicase_C_3 ResIII Helicase_C
Other DBs
NCBI-GeneID: 9653296
NCBI-ProteinID: XP_002978280
JGI: 418040
UniProt: D8S4G6
LinkDB
Position
Unknown
AA seq 747 aa
MSDRPSKKQRKASQEIAAPIAADDDVEYIEAEEEEPEENTKQKDFSALELKSDHDRRPIL
VGCDGRIFLETFSPLYKQAYDFLIAVAEPVCRPEHMHEYNLTPHSLYAAVSFGLETSAVI
TVLERLSKAKLPSTVLDFIRKATLNCGKAKLVLQKNRYFIESPNEEIFKKFLNDPVIARA
RIFNTTQISVVAESLPTDLESLTGEVAEERKVHSFEIDPDQVELVKQRCLSPDLSYPLLE
EYDFRNDTVNPELSIELKPQAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSA
ACRIRRSCLCLATNAVSVDQWAFQFKLWSTIRDDQICRFTSDSKDKFKGNACVIVTTYNM
VAFKGKRSEESEKVIELIRSREWGLLLMDEVHVVPAHMFRKVISITKSHCKLGLTATLVR
EDERITDLNFLIGPKLYEANWLDLVKNGYIANVQCAEVWCPMTKEFYAEYLKKENKKQQA
LYVMNPNKFRACEFLVRFHEQQRGDKIIVFSDNLFALREYATKLKKPFIYGPTSHHERTK
ILYAFKHSPDVNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKPS
DRVRGGSEEYNAFFYSLVSTDTQEMYYSSKRQQFLIDQGYSFKVLTNLPPPDSGEDLGYS
KLQDQMDLLSKVLNAGEDAVGVEKLEHDADDITNLKIHRSAGSMSAMSGGKGRLYTEFST
GGGGGGGSRGKSRDPNKRHNLFKNRYK
NT seq 2244 nt   +upstreamnt  +downstreamnt
atgagcgatcgccccagcaagaaacagagaaaggcgtcacaagaaatcgcggcgccgatc
gcagccgatgatgatgtcgagtacatcgaggcggaggaggaagagccagaagaaaacacg
aaacaaaaggatttcagcgcgctcgagctgaaatcggaccatgacaggcggccgatcctt
gtcggctgcgatggtcgaatttttctcgagactttctccccgctctacaagcaagcttac
gattttctcattgcggttgcggagccagtgtgcaggccagagcatatgcacgagtacaac
ctcactccacattctctctacgctgccgtatcgtttggtttggaaacgtccgccgtgatc
accgtgctcgagcgcctgtccaaagccaagttgccatcgacagtgttggatttcatccgg
aaagcaactctcaattgtggaaaagccaagctcgttcttcaaaaaaatcgctactttatt
gagtcgccgaatgaagagatatttaagaaattcttgaacgaccctgttatcgcccgagcg
aggatattcaacacgactcagatatctgttgttgccgagagcctaccgacagacttggag
tctctgacgggtgaagtagcggaggagcgaaaagttcactcttttgaaatcgatccagat
caggtggagcttgtaaaacagcgctgcctgtcacctgatttgagttatccattgcttgaa
gaatacgactttagaaatgatacggtaaatcctgagttgagtatcgagctcaaacctcag
gctcaacctcggccgtatcaagaaaagagcctgagcaagatgtttggaaatggtcgtgcg
aggtcgggaataattgttcttccttgtggagctggtaaatcactcgttggagtatctgca
gcatgccgcattcgaaggagctgtctctgcttggccactaacgccgtgtccgtggatcaa
tgggcgtttcagttcaagctctggtcgaccattcgtgacgatcagatttgcagattcaca
tcagacagcaaagacaaattcaaaggaaacgcatgcgttattgttaccacttacaatatg
gtcgctttcaagggaaagagatcggaagagtctgagaaagtgattgagctcataagaagc
cgtgaatggggcttgcttcttatggacgaggtgcatgtcgtgccagcccatatgtttcga
aaagtgattagcatcaccaagtcgcactgcaagcttggactaactgccacccttgtgaga
gaggatgagcgtattactgatttgaactttctgattggtccaaaactttacgaagcaaac
tggctagacctcgtgaaaaatggctacattgccaacgttcagtgcgcggaggtctggtgt
cccatgacgaaagagttttatgcagagtatctgaagaaggaaaacaagaaacagcaggct
ttatatgtcatgaacccaaacaagtttcgagcttgtgaatttcttgttcgctttcatgag
cagcagcgtggtgataagattatagttttctctgataatctttttgctttgcgagagtat
gccactaaactgaagaagcctttcatatatggtcctacaagtcatcacgaacggacaaag
attttatatgccttcaagcacagtcctgatgtgaacactatttttctgtcaaaggttgga
gataattcaatcgacataccagaggcaaatgtgatcatccagatatcatcacatgctggt
tctagacggcaggaagcacaacggctgggacgaattttaagagcaaagggaaaaccaagt
gaccgagtaagaggtggctcagaagagtacaatgctttcttttactccttggtctccaca
gatacacaggagatgtactattcatctaagaggcagcagtttctaatcgaccagggatat
agtttcaaggtccttacgaatttgccaccacctgatagtggcgaagacttgggttacagt
aagctacaagatcaaatggatctattgtcaaaggtgttaaatgcgggggaagatgctgtt
ggtgtcgagaaactggaacacgatgcagatgatatcaccaacttgaaaattcatcgcagt
gcaggatccatgagtgcgatgtctggtggcaaaggcagattatatacagaattcagcact
ggtggtggtggtggtggtggttcacgaggaaaatcacgtgaccccaacaagcggcataat
ctgtttaaaaacagatacaagtag

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