Selaginella moellendorffii: SELMODRAFT_419303
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Entry
SELMODRAFT_419303 CDS
T01496
Name
(RefSeq) hypothetical protein
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
smo
Selaginella moellendorffii
Pathway
smo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SELMODRAFT_419303
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smo03019
]
SELMODRAFT_419303
03012 Translation factors [BR:
smo03012
]
SELMODRAFT_419303
Enzymes [BR:
smo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
SELMODRAFT_419303
Messenger RNA biogenesis [BR:
smo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
SELMODRAFT_419303
Translation factors [BR:
smo03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
SELMODRAFT_419303
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
tRNA-synt_His
OB_NTP_bind
HA2_C
DEAD
tRNA-synt_2b
HGTP_anticodon
dsrm
HA2_N
Helicase_C
AAA_22
nSTAND3
ATPase
tRNA-synt_2d
AAA_19
DUF7075
NACHT
AAA_23
Motif
Other DBs
NCBI-GeneID:
9635841
NCBI-ProteinID:
XP_002979641
JGI:
419303
UniProt:
D8S8H4
LinkDB
All DBs
Position
Unknown
AA seq
1665 aa
AA seq
DB search
MAFNRAQPRGYYEYSEDDDLDDRNGGPPAENLHYVNLDEWRLRLTKFLRNKEQTEIISRE
ARDRRYIEPLTLLAKEMGLHCQMFGKAVAISKKPLPHYRPDLDDKRPQREVSFSILTHRR
TNALLEQHLRLKRMSADTSRRALRGPERSASSYEESPTTTMQRSRRLEAKMKEWEESEEG
QKMMTIRRNLPSFKEKAGLLEVIAKNQVVVISGETGCGKTTQLPQYILEAEIEAGRGGSC
NIICTQPRRISAVSVAERVASERGEVIGETIGYQVRLEGIRSRNTRLLFCTTGILLRRLL
TDPSLKGVTHVIVDEIHERGMNEDFLLVILKELLPQRPDLRLVLMSATLNAELFSKYFSK
APTAHIPGFTYPVKSHFLEDVLDLTGYRLNQFNQVDDYGQDKLWKMQKQLAARKRKSPVA
TLAEEAMASQAYNDRSAGTRESLSCWNSDILNFNLIQATLLHICKQAREGAVLKLIFEHP
PPGVRKIVLATNMAETSITINDVVFVVDVGKAKETSYDALNNTPCLLPTWISKASSRQRR
GRAGRVKPGECYHLYPKAVHEAFAEYQLPELLRTPLHSLCLQIKSLQLGDVAMFLSKAMQ
PPESLAVKNALEYLTTIGALDEQQELTDLGRILALLPVEPRLGKMLIMGSIFRCLDPVLT
IAAGLAARDPFIMPMDKRNLADQAKYDFAGREASDHIGLVRAFEGWEAAMSNQVASSYCW
KNFLSMQTLLGMSSLRKQFIGLLTTAGLITDDLGFFNRYSQDPVVLRAVICSGLFPGVAS
VMKKQKSVLYKTIEDGQVLLSASSVNSRDFNPKNPWLMYSEKIKMSSVMVRDSTCISDST
LLLFGGKLIDGHAPGHILMQGSYLEFFMKVDVANTVMRLRQEMDKLILRKLANPSMDIYT
ENKELVDAAFELMRGDDCSGSFVFGRATKGSGSSKGSAELKDKGTPDTKGILQTLVQRAG
FAVPTYQTRSSGSQFISCVVVRGKKFIGEPAESKKQAEKNAAAMAAEWLTSLPRMQDRMA
LPLWSATGNARMPLALPGAHLLADYGSLRAPGRASRSLSIRAAIAHDTYEEPKKSFEARV
KEEVSIDLNPPRGTRDFAPPLMLLRNWLFSHFKEVSRLFGFEEVDFPVVESEALYVRKAG
EEITQQLYNFEDKSGRRLCLRPEITPSIARLIIQKGKSLVFPLRWFTIGQCWRYERMTKG
RRREHYQWNMDIFGVPGVEAEAELLAAIVTLFTNMGFTANDVRIRVSNRKVLQAVLDRYS
VPQDKFNSVCVVVDKINKISKEEVDQQLMDLGLSSTAINGIRHAILLKNLDDIQELIGSS
SEAFLEMKKLFALSKAYGYDEWLVVDLGIVRGLSYYTGIVFEAFDTQGKFRAICGGGRYD
KLISNFGGPSIPACGFGFGDAVIVDLLNECNLSPVLGHEVDDVVFVLDEELRCHACNIVS
RLRSAGRTVDMILENKKLKWVFNYASRIDAKRMILLGIREWEEGNVRVKDLVTREETDVK
VAELVPRVPKEVQRGQGKLPDKERNLRYLHPDEVKLVDASGRYPEEYEVGFPSRGILEAF
VDECKQKHAEFKCRRRGDPAPGHLKYVLREMNLEDVDLEDLTIDDAMNLWVKNSGGIIWE
DAYQLIHDHKLSISHILDMDVFKGQGKLAALKTRREPNIPNYLDD
NT seq
4998 nt
NT seq
+upstream
nt +downstream
nt
atggcattcaaccgagctcaacctcgcggctattacgagtattccgaggatgacgatttg
gacgatagaaatggagggcctccagcagagaatctccactatgttaacttggacgagtgg
cgtttgcggctaacaaaatttttgagaaacaaagaacaaaccgagattatatcgagggaa
gctcgggatcgaagatatatcgagcctttgacacttctcgccaaagaaatgggacttcat
tgccaaatgtttggcaaagctgttgcgataagcaagaagcctttgccgcattacaggccc
gaccttgacgataagcgtcctcaaagagaggtctcgttctccatactgacgcacagacga
acgaatgcattgcttgagcaacacttgcgtctcaagagaatgtcagctgacacgtccaga
agagctcttagggggcctgaaaggtcggccagcagttatgaagaaagccccacaactacg
atgcagaggagccgccggcttgaagcaaaaatgaaagaatgggaggaatccgaagagggt
caaaaaatgatgactatacggagaaacttgccttctttcaaagagaaagccgggctacta
gaagtgattgcgaaaaatcaggttgtggtgatttcaggagaaacaggatgtggtaaaaca
actcagcttccacaatatattctggaggcagagattgaggcaggcagaggcggtagctgt
aacattatttgcacgcaacctcgacgtatttcagctgtttcagtggctgaaagagttgct
tctgagaggggcgaggttataggcgaaacgattggatatcaagtgcgtttagaaggtata
agaagtcgaaatacccgactgcttttttgtacaacgggaattctgttgagacgcttgttg
actgacccaagtctcaagggtgtgacgcatgtgattgttgatgagatacatgaacggggc
atgaatgaagattttcttcttgttattctgaaggagcttcttcctcaacgtcctgacctg
aggctggtgctcatgagcgcaaccttgaacgcggagttgttttctaagtacttttctaaa
gcaccaactgcgcacattccggggttcacgtaccctgtgaagagccactttctggaagac
gtactcgatttgacgggctatagattaaatcaatttaatcaagttgacgattatggccaa
gacaagctgtggaaaatgcaaaagcaactagctgcacgcaaaagaaagtcgcctgtggcc
acacttgccgaggaggcgatggctagtcaggcttataacgacaggagcgccggcacaagg
gagtctttatcttgctggaactcggacattctgaacttcaatttgatccaggcaacatta
ttacacatttgcaaacaagcgagggaaggggcagtcctgaaacttattttcgaacatcct
cctcctggtgtacgaaagattgtgctggcaactaatatggctgaaacgagtatcactatc
aatgacgtagtgtttgtggtggacgtggggaaagccaaggagacctcttacgacgctttg
aataacacaccatgtcttcttcctacgtggatatcaaaagcatcttcgcggcagcgtcga
ggaagagcaggacgtgtaaagccaggggaatgttatcatctctatcccaaggccgttcac
gaagcatttgctgaatatcagctgccggagcttcttcgaacacctttgcattctttatgc
ttacaaatcaagagtttgcagcttggagatgttgcaatgttcctatcaaaggctatgcaa
ccacctgaaagtctggcggtaaaaaatgcgcttgaatatttgactactattggagctttg
gatgaacagcaggaattgacagacttaggaagaatactggcattattgccagtcgagcct
cgacttggcaagatgctcataatgggatccatcttccgctgcctagaccctgttctaaca
attgctgccggtttagctgctcgtgatcctttcattatgccaatggacaagagaaatcta
gcagatcaagccaaatacgattttgctggtcgggaagccagcgatcatataggcctcgtt
cgagcctttgaagggtgggaagccgcaatgagcaaccaggtggcgtcttcatattgttgg
aagaacttcctatcaatgcaaacattgctaggaatgagttctctccggaagcaatttatc
gggctcttgacaacggcagggcttatcacggatgacctgggatttttcaacaggtatagt
caagacccggttgtcttaagggctgtcatctgctcgggtttgttccctggagttgcctcc
gtgatgaaaaaacaaaagtctgtgttgtataaaaccatcgaggatggccaagttttgctt
agtgctagttcggtaaactccagggacttcaatcctaaaaatccctggctaatgtacagc
gagaagatcaaaatgtcaagcgtgatggtccgtgattcaacctgcatttcagattcaacg
cttttgctgtttggaggcaaattgatcgatggccacgcgcctggacacattcttatgcaa
gggagctacttggagttcttcatgaaagtagacgtagcgaacactgtcatgagacttcgc
caggagatggacaaactaatcctccgaaagctggctaatccctccatggacatctacacg
gagaacaaggagctcgtggacgctgccttcgagctcatgcgaggggacgactgctcgggc
agcttcgtctttggccgggccaccaaaggcagcggctcctccaaaggctcggcagagctc
aaagacaaaggcactccagacaccaaaggaattctccaaactttggtccagcgagcaggc
tttgcggttccaacgtaccagacgagatcgtcggggtctcagttcatatcgtgcgtggtt
gtccgaggcaagaaatttatcggcgagcccgccgagtcgaagaagcaagccgagaagaac
gccgccgccatggccgccgagtggctcacgagcttaccaaggatgcaagaccgaatggcg
ctgccgctgtggagcgctaccggcaacgcgcgaatgccactggcgctgcctggcgcgcat
ctcctggcggattatggctccttgcgtgctcctggccgagcgtccaggagcttgagcatc
cgggcggcaatagcgcacgacacctatgaggagccgaagaagtctttcgaggctcgcgtc
aaggaggaggtgtctatcgatttgaatccgccgcgcgggacaagggatttcgccccgccg
ctgatgctgctgaggaactggctgttctcgcattttaaagaggtctcaagattatttgga
tttgaggaggtggactttccggtggtggagtcggaagcgctatacgtcagaaaagctgga
gaagagattacacagcagctctataattttgaagacaaatctggccgcagactatgcttg
cgaccagaaattacgccgtcgatagcaaggcttatcatccaaaaggggaaatcgctcgtt
ttccctctgcgatggtttacgattggtcagtgctggcgttatgagagaatgacgaaggga
agaagaagagaacattatcaatggaacatggacatatttggggtgcctggcgttgaggca
gaagctgaactccttgcagctattgtcacattattcactaacatggggttcaccgcaaat
gatgtgcggatacgtgtctctaatcgtaaggtgctccaagctgttttagatcgatattct
gttccacaggacaaattcaacagtgtatgtgtagttgtagataagatcaacaagatctcc
aaagaggaagtcgaccaacaactcatggacctgggactctcttccacggctatcaatgga
attagacatgctatactacttaaaaaccttgatgatattcaagaattaatcggatcttca
agcgaggcatttttggaaatgaagaagttgtttgctttgtcaaaagcttatggctacgac
gagtggctagttgtagatttgggaatagtgcggggactgtcatactacacgggtatcgta
tttgaggcatttgatacgcaagggaaatttcgtgcaatctgtggtggtggtcgatacgat
aagcttatttcaaattttggaggcccttcgatacccgcctgcggatttggttttggggat
gcagttattgtagatcttttaaacgaatgcaatctatcgccagttctcggacacgaggtt
gacgacgttgtgttcgtcttggatgaggagctccgctgtcatgcgtgcaacattgtgtcg
cggctgcgctcggctggacgtactgttgatatgattttagaaaacaaaaaactgaaatgg
gtattcaattatgcatcaagaatagatgcaaaacgcatgattctcttgggcataagagag
tgggaagagggaaatgttcgcgtgaaagatctagttacgagagaggagaccgacgtaaag
gtggctgaactggtgccaagagttcccaaagaggtgcagcgtggtcagggtaaactccct
gacaaggaacgcaatcttcgttatttacatcccgacgaggtgaaattggttgatgcctct
ggaagatatccggaagagtatgaagtaggatttcctagtcgtggcattctggaggctttt
gtggacgagtgcaagcagaagcatgccgaattcaaatgcaggcgccggggagaccctgct
ccggggcaccttaagtacgttctaagggagatgaaccttgaagacgttgatctcgaagat
ttgacaatagatgacgccatgaatctgtgggtgaaaaactcgggcggtattatttgggag
gatgcatatcagttgatacacgatcataagctctcaatctcccacatactggacatggat
gtttttaaaggacaagggaagctggctgccttgaaaacaagacgagaaccgaacattccc
aactatcttgacgactaa
DBGET
integrated database retrieval system
