Selaginella moellendorffii: SELMODRAFT_422967
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Entry
SELMODRAFT_422967 CDS
T01496
Name
(RefSeq) hypothetical protein
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
smo
Selaginella moellendorffii
Pathway
smo03022
Basal transcription factors
smo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
smo00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
SELMODRAFT_422967
09124 Replication and repair
03420 Nucleotide excision repair
SELMODRAFT_422967
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
smo03021
]
SELMODRAFT_422967
03400 DNA repair and recombination proteins [BR:
smo03400
]
SELMODRAFT_422967
Transcription machinery [BR:
smo03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
SELMODRAFT_422967
DNA repair and recombination proteins [BR:
smo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
SELMODRAFT_422967
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BSD
PH_TFIIH
I_LWEQ
Motif
Other DBs
NCBI-GeneID:
9643833
NCBI-ProteinID:
XP_002983776
JGI:
422967
UniProt:
D8SK47
LinkDB
All DBs
Position
Unknown
AA seq
569 aa
AA seq
DB search
MAGASASWRAKSLPNPKSDGIPGILTMTPSGFKWTPNIPNAAKALNVDCRSLRGQRASKE
ATSKKAILNLLTDSTAVQYFFEFENFVDRDASRNFLAPFLANAATPIANNELAANQASTS
ARPPGQNESLNQTEMERRIKLLQGDRQALFLRCFCFKAALRVCQLINNSASICGVQKTGD
NHKMRTGMASTMLADIRPMADGRTNTVTFNITPEIIHQIFAEKPAVHRAFLNFVPSKMTE
IAFWTKYCRNDYLHRTKNAAAATAEAQDDEELAVFVNDDDIIAKEYRRKIKRVDPTLDIA
ADNADSSLPGHGIYRDRAKDPIDGNMRNKLMRDINRHGEVVLEGRLLEENRNDAMSIAQA
LAKVQQQGCVWFELDPRKYFDVQANTNIGASSSSTLHPNEILQRLRQQIEEFEHQDETAP
IIPGSLAFKVLTELTQQVSSTHHSLGRTAEKNVLDSLPRSVREALLQHSSFINEVLRQFW
ATCPITSNALLQKANRLKDCMAKVYNEIQALKSSVQSEHRHQVSLILQPMFQTLDAALVH
YEAEIEKRSAKKLGNGGPSEHVNGMLAVK
NT seq
1710 nt
NT seq
+upstream
nt +downstream
nt
atggcgggggcgagcgcgtcgtggagagccaaatcgctccccaatcccaaatccgatgga
attcctggcatcctcacgatgactcccagtggcttcaaatggactcccaacattccaaat
gctgcgaaggcgttgaatgtcgattgcaggtccctcagaggccaacgagctagcaaagaa
gctacatccaagaaggctatactaaacttgctaacggactccacagcggtccaatacttt
tttgagtttgagaacttcgttgacagggatgcttctcgcaatttccttgcaccgtttctt
gcaaatgctgcaactccgattgctaacaacgagctggcagctaaccaggcttctacatcg
gcacgtcctccgggacaaaacgaaagcctcaatcagactgaaatggagcggcgaataaaa
cttttgcaaggagacaggcaggctctcttccttcgctgcttttgctttaaagctgcttta
cgcgtgtgccaattaatcaataattcagcttctatctgtggagtgcagaagacgggagat
aatcacaaaatgaggactgggatggcaagcacaatgcttgctgatatccgtccgatggcc
gatggccggacgaacacggtgacgtttaacatcacgccagagatcattcatcagatattt
gcggaaaagccggctgtacatcgagcttttctgaactttgtaccatcaaagatgaccgaa
atagccttctggacaaagtactgtaggaacgattatctccatcggactaagaatgccgcc
gcagcaacggctgaagcacaagatgacgaggagctagcagtatttgtgaacgacgatgac
attattgccaaagagtatcgccggaaaataaaacgagtggatccaactttagacatcgct
gcagacaatgcagattcttctctgccgggacatggaatttacagagacagagctaaggat
cccatcgatggcaacatgaggaacaaactaatgcgcgatattaacaggcacggggaagtt
gtgctagaaggtcgactcctcgaggaaaacaggaacgatgcaatgagcattgctcaggct
ttggcaaaagtccagcaacaaggttgcgtttggttcgagctcgatcctcgcaagtatttc
gatgtacaagccaataccaacattggagcgagtagttcttcaacgctacatcccaacgag
atcttgcagcgtttgaggcagcagatagaagagttcgaacaccaggacgagacagctcct
ataattcctggatctctcgctttcaaggttttaaccgaactcacgcaacaagtctctagt
acgcatcattctctcggaagaactgccgagaagaatgtccttgacagtctaccacgctcc
gtgagggaagctttacttcagcactcgtcattcatcaacgaagttcttcgacagttttgg
gcgacctgtccaatcacttcaaacgctcttctacaaaaggcaaatcgtctcaaggattgc
atggctaaagtctacaacgaaatacaggctttgaaaagctcggtgcaatcggagcatcgc
caccaagtctcgctcatactgcagccgatgtttcagacgctcgatgcagctcttgtgcac
tacgaagctgagatagaaaagcggagtgccaagaaacttggaaatggtggaccttccgag
cacgtcaatggaatgttggccgtcaagtga
DBGET
integrated database retrieval system
