Selaginella moellendorffii: SELMODRAFT_426836
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Entry
SELMODRAFT_426836 CDS
T01496
Name
(RefSeq) hypothetical protein
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
smo
Selaginella moellendorffii
Pathway
smo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SELMODRAFT_426836
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smo03019
]
SELMODRAFT_426836
03012 Translation factors [BR:
smo03012
]
SELMODRAFT_426836
Enzymes [BR:
smo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
SELMODRAFT_426836
Messenger RNA biogenesis [BR:
smo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
SELMODRAFT_426836
Translation factors [BR:
smo03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
SELMODRAFT_426836
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
AAA_22
nSTAND3
NACHT
T2SSE
AAA_19
ATPase
ABC_tran
Rad17
CNDH2_C
Motif
Other DBs
NCBI-GeneID:
9656775
NCBI-ProteinID:
XP_002988123
JGI:
426836
UniProt:
D8SXN2
LinkDB
All DBs
Position
Unknown
AA seq
935 aa
AA seq
DB search
MRGPDVELDEDEWWTKLEEHKFSDEEEIVIKTNYGRAGADKLEAMARESGFYFHAYNRGR
NTVLVISKAPLPNYRADLDEKHGQSQRKISISADTETHVESMLAKSIGKISVVKDSAGTS
SHGDDSTLDERRKAVVNASPAAKSMTSFRKKLPAFKMKDEVLQAVSQNQVLVVSGETGCG
KTTQLPQFILEEEINAGRGAACDIICTQPRRISAISVATRVADERGDELGESVGYQIRLE
ARRSQETRLLFCTTGVLLRRLVQDPLLEGVSHVIVDEIHERGMNEDFLLVVLRDLLPKRP
KLRLILMSATINADMFSKYFGNAPKLHIPGFTFPVREFFLEDVVESTGFQSQNNQASSRF
SGGRRIEKQKDSLTELFEEVAIQDTYKQFSKSTRKYLECWNPEIIDLDLVEAAIQHICEE
KNDGAILVFLTGWDDISKLLDKLKLNPSVRNELLLPLHGSMPTINQRQIFQRPPPGVRKI
VLATNIAETSITIDDVVYVIDCGKAKETSYDALNKLACLLPSWISRAAAHQRRGRAGRVQ
PGICFHLYPKLMYDAMAQYQLPEILRTPLESLCLQIKSLQVGSIAKFLSKALEPPELRAV
DNAIESLKTIGALDDREELTSLGRHLATLPLDPKVGKMLLMGAIFQCLDPALTIAAALAH
RDPFVIPIDKRDAADEAKRRLAGNARSDHLALMRAYEGYIVAKRHGRERNYCWENFLSAQ
TLQWMDGAREQFYDHLSKIGFVDNSSNSANYAVEITLQCLSPTYDAFLVQAYNKHSDDLE
MVRAVLCAGLYPNVVQCKARGRRTAFFTKDDGKVEPHPASVNSRVGQFAQPWLVYSEKVK
TTGIYLRDTTNISDYALLMFGGPLVSNGKGVEMLDGYLQFTASAKTMELVNALRSQLDDL
LTRKIKDPRFDIHREGKHVVSAVLALLHCEEKQYY
NT seq
2808 nt
NT seq
+upstream
nt +downstream
nt
atgaggggtcccgatgtggaattggacgaggatgaatggtggacgaagctggaagagcac
aagttctcggacgaggaagagattgtgataaaaacgaactatggacgtgccggcgctgat
aagctcgaggcaatggctcgtgaatctggattttattttcatgcatataaccgaggccgg
aacacggtgctggttatcagcaaagctcctctgcccaactatcgagctgatcttgacgag
aagcatggacagtcgcagcgtaagatcagtatctcagctgacacagagacgcatgttgag
tccatgctagcgaaatcaattggaaaaatctcggtggtgaaagactccgctggaacatct
tcacacggtgacgacagtactttggatgaacgtcggaaagctgttgtgaacgccagtccg
gcagcaaagtcaatgacatctttcagaaagaagcttcctgcttttaaaatgaaagatgag
gtcctgcaagcggtttctcaaaatcaggtgctagtagtctccggagaaacaggatgcggg
aaaaccacgcagttgccacagtttattctcgaagaagagataaatgcaggacgaggcgcg
gcttgtgacataatttgtacacaacctcgaagaatttccgctatatcagttgctactcgc
gttgctgatgaacggggagacgagcttggtgaaagtgttggctatcaaatccgactggag
gccaggcgttcgcaagagacgaggctactcttttgcacgactggtgtgcttttgagacgt
ctggttcaagatccgctgctagagggcgtcagtcatgtgatagtcgatgaaatacacgag
cgtggaatgaacgaagacttcctgctggttgttctacgagaccttctaccgaagaggcct
aagctacgtctcattctcatgagcgcaactatcaatgccgatatgttctccaaatatttt
ggcaatgcaccgaagctgcacattccgggttttacctttcccgttcgagaatttttcctg
gaagatgttgtggaaagtactggattccaatcacaaaataaccaagcaagttctcggttt
tctggaggaagacgaattgagaaacaaaaggattctctgactgaactttttgaggaagtg
gccatccaagatacatacaagcaattttccaagtcaacaaggaagtatttggagtgctgg
aatccagaaatcatagaccttgacctggtggaggcagcaattcaacacatttgcgaagag
aagaacgatggtgctattctggtattcttaacaggttgggatgacatttccaagcttttg
gacaagctgaaactcaatccatccgtaagaaatgaactgctgcttcctctgcatggatcc
atgcctacaattaatcaaaggcaaatatttcagcgccctccacctggtgtaagaaaaatt
gtcttagcgacgaatattgcagaaactagcataactattgatgacgttgtgtatgttatc
gactgtgggaaagctaaggaaactagctatgatgctcttaacaagctggcgtgccttctt
ccatcctggatatccagggctgctgctcatcagagaagaggacgagccggaagggtgcaa
cctggaatttgttttcatctctacccgaagctgatgtacgatgctatggcacagtatcaa
cttccagaaatcctgcgaacacccctggaatctctttgtctgcagataaagagcctacag
gtcggaagtatagcgaagttcttatctaaagctctggagcctccagagctccgtgctgtg
gataatgctattgagtctttaaagacgatcggtgccttggacgatcgtgaggagctgacg
tctcttggtcgacaccttgcgacattgccgctagatccaaaggttggcaaaatgctgctg
atgggagccatatttcagtgtctagatccagcgctaacgattgcggcagccttggctcac
cgggatccttttgttattccgatcgataagagagatgctgctgatgaagcgaaacgaagg
ctcgcaggaaacgcgagaagtgaccacttagctctaatgagggcatatgaaggttatata
gttgccaagcgacatggacgcgaacgcaattattgctgggagaattttttatctgcacag
actctacaatggatggacggtgcgagagaacagttttacgaccatctttctaagattggc
ttcgtcgataactcgtcaaactcagcaaactatgcggtagagattactttgcaatgtctg
tctccaacttacgatgcttttctcgtccaggcttacaacaagcacagtgacgatctggaa
atggttcgtgcggttttgtgcgctggtttatacccaaacgtcgtgcaatgcaaagcaagg
ggaaggcgaacagcgtttttcacaaaggacgatggcaaagtcgagcctcatccggcctct
gtcaacagtcgagtcggccagtttgcacagccatggctcgtctacagcgagaaggtgaag
acaaccgggatctaccttcgggacaccaccaacatttccgactatgctcttctcatgttt
ggagggccgctcgtctcaaacggcaaaggtgtggagatgctcgatggctatctacaattc
acagcgtctgccaagaccatggagcttgtaaatgcattgcggtcgcagctagatgacttg
ctcacgagaaaaatcaaggatccaagatttgatatacatagagaagggaaacatgtggta
agcgcagttttggcactgttgcattgcgaggagaagcaatattattag
DBGET
integrated database retrieval system
