Selaginella moellendorffii: SELMODRAFT_429199
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Entry
SELMODRAFT_429199 CDS
T01496
Name
(RefSeq) hypothetical protein
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
smo
Selaginella moellendorffii
Pathway
smo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
smo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
SELMODRAFT_429199
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
smo03041
]
SELMODRAFT_429199
Enzymes [BR:
smo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
SELMODRAFT_429199
Spliceosome [BR:
smo03041
]
Complex C
Other components
Step II factors
SELMODRAFT_429199
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MFS_1
OB_NTP_bind
Sugar_tr
HA2_C
Helicase_C
DEAD
HA2_N
AAA_22
AAA_19
ResIII
nSTAND3
AAA_30
FtsK_SpoIIIE
ABC_tran
PhoH
AAA_16
Motif
Other DBs
NCBI-GeneID:
9658551
NCBI-ProteinID:
XP_002990848
JGI:
429199
UniProt:
D8T5D1
LinkDB
All DBs
Position
Unknown
AA seq
1141 aa
AA seq
DB search
MAASKSPGRFKQRNAIAPHSQQASARRKSIEEQRRALPITIARQKLVDEVHKNDTLVIIG
ETGSGKTTQLPQFLLRAGFSKRGKMIGITQPRRVAAVTVATRVAEEMGSELGREVGYSIR
FEDATSDLTRIKYMTDGMLLREALLDPLLRKYGVIVIDEAHERTVHTDVLLGLLKGVQAK
RTEEHGPKKESLKLIVMSATLDAQGFSAFFNNAKIVYIQGRQFPVEIFYTFTSEADILDA
SLITLLQIHTEEEPGDILVFLTGQEEIESMDRLIHDRLPRLPPGSLKIQVVPIYAALPSE
QQVKAFIPAPPGTRKVILATNIAETSVTIPGIRYVVDPGLVKSRSYNPRIGLESLIVVPV
SKAQALQRRLVYHVTRFAFPRPGKCYRLYMEETFKQLENATVPEIKRCNLASVVLQLKAL
GIDDVLGFDFMDKPPKMAILKSLEHLYILGALTDEGKLSDPVGIQMARLPLEPLYAKALL
ISANFNCSKEMLSAVAMLSVESIFFVPKDKKKEADAAKQRFLSGDGDHITLVSVMRAFTD
EVNKSGGGVVSKKQILRWCIENYINMRSLKRAVDIYRQIEGCIQAINLPVVSCGEDFTSF
RRCLAAAFFLNAACLQQDGTYRIALRTLANTQVVSIHPSSIMHGKKLDCVVFNELVKTNK
QFIRNVTRIDSLWLPELAPHFYGTRDARRGEWPYRHRNNFRNLNLGVLRSFATALPIAVI
FPFLYFMVQDFHVTKSDADIGYFAGWIGSSFMAGRALTGILWGTIADKYGRKPVIFCGIM
SIIVFNTLFGLSKSFWMALTTRFLLGTFNGLLGTMTAYATEICSEEHVPFSVSLVGSMWG
VGLILGPALGGYLSQPAIKYPGVFAGTIFDSYPYFLQALVITIYAVMVLAQLAQLPETLH
KHEVFANDGKAGAYDPKESLLKNFPLISSILVYCIWAFHDIAFSEVGRSACTTLMEFRAD
ILPVGSESQTHGWSRLDEYRRWTSARSLGYGYNKQSGNIPCYISITYQALSIPLLVLLPS
LTSLEDTWLRVVVTVIAILKCCLGSAASTAAFLLVNNSVVKAQRGAANGLSLSVVSLFRA
LGPAVGGSVFAFAQTRPHASILPGDQLLFFFLGATAFISVLSTFPPFLPQSTNKPIIEDD
F
NT seq
3426 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgtccaaatcgcccggccgattcaagcagcgcaatgctatcgcgccgcattcg
cagcaagctagtgccaggaggaaatcgatcgaggagcagcggcgcgcgcttcctatcaca
atcgctcggcagaaattggtggacgaggtccacaagaacgatactcttgtgatcatcggt
gagactggaagtggaaaaactacgcaacttccgcagttcttgcttcgtgccggcttttcc
aagcgtggaaaaatgattggaatcacgcagccgaggagagtagctgctgttactgtggct
actcgtgttgcggaagagatgggaagcgagctgggacgtgaagttggatactcgatccgg
ttcgaggacgcgacgtccgacttaacgaggatcaagtacatgaccgacggaatgctcctc
agggaagctctgcttgatcctttgcttcgaaagtatggcgtaattgtaatagacgaagct
cacgaaagaacagtacatactgacgttctcttgggacttttgaaaggcgtccaagctaaa
cgcacagaggagcatggaccaaagaaagaatcgctcaagcttattgttatgtcagctacg
cttgacgcgcaagggttctcagcttttttcaacaatgcgaagatagtctacatacaagga
cggcagtttccagtggaaatcttctacacttttacgtccgaagcagacatcttggatgcg
tcattgataacgttgctccagattcatacggaagaagaaccaggagatatacttgttttt
ttgacgggacaagaagagatcgagtctatggataggctgatacacgatcgactgccacgc
ctccctccaggatcattaaaaattcaagtagttcctatatatgctgctttacccagtgag
cagcaagttaaagcttttattccagcaccacctggaacccgtaaggttatcttagccacc
aacattgcagaaacttctgtaactattccaggaatacgctacgtcgtagatcctggtcta
gtaaagtcccggtcctacaatcctcgcatcggtctggagtcgttgatagttgtgccggta
tcaaaagcgcaagctcttcagcgaaggttggtctaccatgtcactagatttgcttttcct
agacctggcaagtgctacagattgtatatggaggagacattcaagcagctcgagaacgct
actgttcctgaaatcaagcggtgcaatcttgctagcgtcgtgttgcagttgaaggcgctg
ggtattgacgatgttctcggcttcgatttcatggacaaaccaccaaagatggccatattg
aagtccctcgaacacttatatatattgggagcactgacagacgagggaaagctttcagat
ccagttggtatccagatggctcgcctgcctctggagcctctctacgcaaaagccttactc
atctcagcaaactttaattgtagcaaagagatgctatccgctgtcgcaatgctttctgtc
gagtcaatcttcttcgtaccaaaagataaaaagaaagaggcggatgctgcaaaacaacga
tttttgagcggagacggtgaccacataactcttgtcagtgttatgcgcgcctttacagat
gaagtaaataagagcggaggcggcgtggtttcgaagaagcaaatccttcggtggtgcatc
gagaactatatcaatatgcgttctctaaagcgtgccgtggatatctataggcaaatcgaa
ggttgcatacaagcaattaacctgcctgtggtttcatgtggagaggacttcaccagcttt
cgcaggtgtttggcagccgcattctttttaaatgcagcctgtctacagcaagatggtacc
tacaggattgctctcagaacgctggcaaacactcaagttgtttccatccatccctcctca
ataatgcatgggaagaagctggattgcgtcgttttcaatgagctggtgaagacgaacaaa
cagttcattagaaatgtgacgaggatcgactctctgtggcttccagagcttgcaccccac
ttctatggtacccgagatgcgcggcgtggcgagtggccttatcgtcaccggaacaatttc
aggaatttaaatttgggggttttacgatcgtttgcaacagcgctgccaattgccgtcatc
ttcccgttcttgtacttcatggttcaggactttcatgtgaccaagtcggatgctgatatc
ggatactttgctggatggatcggctcgtctttcatggctggaagagctcttactggaatc
ttgtggggaactatcgccgacaaatacggcaggaaacccgttatcttctgcggaatcatg
tcaatcattgtcttcaacacattgtttgggctgagtaaaagtttctggatggctctgacg
acccgtttcctgctgggaactttcaatgggctgcttggaacgatgacggcctatgctact
gaaatttgcagcgaagaacacgttcccttcagcgtgtcacttgtcggatcaatgtgggga
gttggacttatactcggtcccgcattggggggctacttgtcacagcccgctataaagtat
cctggagtttttgctggcaccatttttgatagctacccatatttcctccaagctctggtt
attaccatctatgcggtgatggtgctcgcccaactcgcccagctacctgaaacacttcac
aagcacgaagtgtttgcaaacgacggtaaagctggagcctatgatcctaaggagtccctg
ctgaaaaactttccattgatatcttccattttagtgtactgcatctgggcgttccacgac
attgcgttttcggaggtgggtcgaagtgcctgtaccactctcatggaattccgtgcagac
attctccctgtgggcagtgagtcccaaacgcacgggtggtctcggctggacgagtacaga
cgttggacaagcgctcgctctctcgggtatggttacaacaaacaaagtggaaacatccct
tgttatatttccatcacttaccaggcattgtcaataccactactggtcttgctgccgtct
ctaacaagcctcgaagatacgtggctgcgagttgttgtgactgtaatagccatactcaag
tgctgccttggctcggcggcctcaaccgcggccttcctcctagtcaacaattccgttgtg
aaagcacagcgaggagctgcgaatggtctttccctgagcgtcgtttccctcttcagagca
ttgggaccagcggtcggaggctcagtttttgcgtttgcgcaaactcgcccccatgcatca
atacttcctggcgaccagcttttgttcttcttcctgggcgcaaccgccttcatctcagtc
ctctcaacctttccaccatttttgccacaatcgaccaacaagccaatcatagaagacgat
ttttga
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integrated database retrieval system
