Selaginella moellendorffii: SELMODRAFT_437743
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Entry
SELMODRAFT_437743 CDS
T01496
Name
(RefSeq) hypothetical protein
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
smo
Selaginella moellendorffii
Pathway
smo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SELMODRAFT_437743
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smo03019
]
SELMODRAFT_437743
03012 Translation factors [BR:
smo03012
]
SELMODRAFT_437743
Enzymes [BR:
smo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
SELMODRAFT_437743
Messenger RNA biogenesis [BR:
smo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
SELMODRAFT_437743
Translation factors [BR:
smo03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
SELMODRAFT_437743
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PMSR
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
T2SSE
AAA_19
Rad17
Motif
Other DBs
NCBI-GeneID:
9656531
NCBI-ProteinID:
XP_002961355
JGI:
437743
UniProt:
D8QTB0
LinkDB
All DBs
Position
Unknown
AA seq
1420 aa
AA seq
DB search
MLPWQAPALQSIVSRVAFVRHKYHNRIRPHLMQLGVRKSYRLYELKMGLEESDDEDEFLN
YLQKEVTSTYIERWRRRMSLLLQSSKNEIMSMESKDLKCYNAISYIAKELGLYINLYWKT
IVVSKLPLPLYRPDLDPDRPQRQVYVAPATFFRVKAFLDEYKRHRKEKEAKVELFPIVAT
EQPPQSLPDVYDPLAGIFGDAKKSKLMFDRQRAWQDSREGQIALGFRSKLPAFQLRSAFL
ESLSRCQVLVVTGGTGCGKTTQLPQYILESEIDGGCGSSCKIVCTQPRRISASSVALRVA
EERGEVLGESVGYQVRFDSVRSRSTSLLFCTTGILLRRLMSDPVLNGVTHVIVDEIHERG
LNEDFLLIVLRDVIQRRPDLKLILMSATVDAKLFEKYFLDLNTRCMDIPGFAYTVKSYYL
EDVLNITGYKLSMQSRMWKYLRQAPEASDLRAHISEENIVREALNAEDYSNAGEESIDFT
LIEKLLCHICEHGQEGAVLVFMTGWEDISALRRQLRTHPVLGHPSRVWLLACHGTMSPDE
QKRIFDRPPSRVRKIILATNIAETSITVEDVVYVVDIGKAKEKSYDVATNTACLLPRWIS
KSSVRQRKGRAGRLKPGVCYHLYPESVFQAFEDHNEPEILRTALHNVCLRIKGLQLGDIQ
TFLAKAIEPPNRHAVHIAIEFLKVIGALDETEELTVLGKHLAILPVEPQIGKMLIMGCIF
QCLDPMLTIAAALSSRDPFILPVDKREDSNQAKFKFSIGEMSDHLAVVRAFNDWEVCMKH
NTASEFCRANFLSMQVLIGMTSMRKQFLSLLQEAGYLDGGLASCEAYSSDPMIVRAVICA
GLFPGVAAVVATPGSVTHKTMDGTVVHVHPHSVNARHEESCFPWLVFLEKIKTSNVFIRD
STGISDSVLLLFGGALVSIGQPGHLQMCGKCLEFFMGESEAELFQEMRDLLDELLKLKLA
RPDLDIYKHRDGLLMRAVMLMIRGDALAGKFMYGKRTDVGTFDGLIGDKDSKVALRVALL
REGLTRRPSVSTKLNRAKQHVSTIQFRGLKFIGEPDRLKRQAERNACAEAVAWLANPDNA
EKKKLLMWGGGKLTKVRLGDCMGQLKKLLGKLPPEDEERLRSFEDPKSKKQRSNALVPID
EKKNSKIRKSRKANEEIVTQRAKRFIMSGASVLGVLGHGCAHILPPIAAPSARIHNRALG
FSVRSSRSVASPMANLGGWLSKLGVGRATARVRDPEGAKIAQGPDDDAPAPGQEFAQFGA
GCFWGVELAFQRIPGVTKTEVGYSQGTVHNPSYEDVCNGDTGHSEVVRVQYNPKETSFSS
LLDVFWDRHDPTTLNRQGNDVGTQYRSGIYFYHPEQEKAARESMQKHEEKIKRKIVTEIL
PATKFYRAEEYHQQYLAKGGRSGFRQSAEKGCNDPIRCYG
NT seq
4263 nt
NT seq
+upstream
nt +downstream
nt
atgctgccatggcaggcgcctgcattgcagtcgatcgtgtcccgcgtcgcatttgtcagg
cacaagtatcacaacaggattcgcccccatctcatgcaactcggcgtccgcaagagctat
cggctgtatgagctcaagatggggctggaggagagcgacgacgaggacgagtttctcaat
tacttgcagaaggaggtcacaagcacgtacattgagagatggagacgaagaatgtctttg
cttcttcagtcttccaagaacgagataatgtccatggaaagtaaagatctcaagtgctac
aatgctataagctacattgccaaagagcttggtctctacattaatctctactggaaaacc
atcgttgtcagtaagcttcctctaccattgtatagaccggacttggatccggatcgtccg
caacgacaggtttatgttgcaccagccacgtttttcagggttaaagcgtttctagacgag
tataaacggcacaggaaagagaaggaagccaaggtggagctttttccaatcgttgctaca
gaacaaccccctcagtctcttccggatgtttatgatccgctagctggcatttttggcgat
gcgaaaaagagcaagctcatgtttgatagacaacgcgcatggcaggactctcgagaggga
caaatagctcttgggtttcgtagtaaacttccagcgttccagttaaggtctgcattcctc
gagtcactgtcccgttgtcaggttctggtggtaactggaggaactggctgtggcaaaaca
acacaacttccacaatatatacttgaatctgagattgatggtggatgcggttcgtcgtgt
aagattgtttgcacccagcccaggcgtatctcagcttcctctgtcgctttgagagtggcg
gaagaacgcggtgaagttcttggtgaatctgtaggatatcaggtgcggttcgactcagtg
agaagccggtctacgagcctactgttttgcaccacgggtatattgctaaggcggctgatg
tctgatccagttttgaacggagtgacgcacgtaattgtcgacgagatacatgagcggggt
ttaaacgaagattttcttcttattgttttaagagatgtcatccagcgccgtcccgatttg
aaactcattcttatgagcgctactgtggacgctaagctttttgagaagtatttcttggat
ttgaatactcgttgcatggatataccgggatttgcatacactgtgaaatcttactattta
gaagacgttttgaacataacaggatacaaattgagcatgcagtcaagaatgtggaagtat
ctacggcaagcgcctgaagcctccgatctgcgggctcatatttcagaggagaatatcgtc
agagaagctcttaatgctgaagattacagcaatgctggagaagaaagtatcgatttcacc
ttgatagagaagctactctgtcacatctgcgagcatggccaagaaggtgcggtgctggtt
tttatgactggctgggaagatatttctgctttgaggcgtcagctaagaacccatcctgtg
ctaggccatcctagccgagtgtggcttcttgcgtgccatggaaccatgtcgcccgacgaa
cagaagagaatttttgatcgtccaccttcacgtgtacggaagatcatcctggcaacaaac
attgccgaaactagcatcacggttgaggacgttgtgtacgttgtcgatataggaaaagcc
aaagagaagagctatgatgttgcaacaaacactgcatgtttgctgccaagatggatttcc
aagtcgtctgtgcgccagaggaaaggcagagctgggcgtttgaaaccaggtgtttgttac
catctctatccagaatccgtttttcaagcgtttgaggaccacaatgaacctgagatattg
agaacagctctacacaacgtatgcctcaggattaagggattgcaacttggagatatccag
acgttcttggcaaaagctatagagcctcccaaccgacacgcagtgcacatcgccatagag
ttcttgaaggtgattggtgcattggatgaaacagaagagctgacggttcttggaaaacat
ctagcaatacttccagttgaaccgcagattggaaaaatgttgatcatggggtgtattttt
caatgccttgatcccatgcttactattgctgctgcactttcgtcccgggatccatttatt
cttcccgtggacaagcgagaggattccaatcaagccaagttcaagttttccataggagaa
atgagtgaccacctcgcggttgttcgagcattcaacgactgggaagtgtgcatgaagcac
aatacggcatcggagttctgccgtgcaaattttctttccatgcaagtgttgataggaatg
acttccatgagaaagcaattcctatcactattgcaggaagccggttatctcgacggcggc
ttggcgagttgcgaagcttattcatctgatccaatgattgtccgagctgtgatttgcgct
ggtttgttcccgggagttgcagctgttgtggcaactcctggatcagtgacccacaagaca
atggacgggactgtagtgcacgttcatccacactcagtgaatgcaaggcacgaggaaagc
tgctttccatggctggtgttccttgagaagataaagacatctaacgtgttcattcgagac
tcaacgggtatatcggactcggtgctacttttgttcgggggagcgttggtgtcgataggc
cagccaggacatttgcaaatgtgtgggaagtgcttggagttcttcatgggtgaaagcgag
gccgaattattccaggaaatgcgagatcttttggatgagcttctgaagctaaagctagca
aggcccgacctcgacatctacaaacaccgagatggtctgctcatgcgagcagtgatgctc
atgatcagaggcgacgctcttgccggcaagttcatgtatgggaagagaacagacgtaggt
actttcgatggtctcatcggcgacaaggactccaaagtagcactccgagtagctctcctt
cgggagggcctgactagaaggccgtccgtgtccacgaagctaaaccgagcaaagcagcac
gtctccacgatccagttccgaggcctcaagtttatcggtgagccggacaggcttaagagg
caagctgagaggaatgcttgcgccgaggcggtggcatggctcgcaaatccagacaacgcc
gagaagaagaagctgctcatgtgggggggaggaaagctcaccaaagtccggcttggagat
tgcatgggacagctgaagaagctcctgggaaaacttccaccggaggacgaagaacgcttg
cgaagctttgaagatcccaagagcaagaagcagcgaagcaatgctctcgttccaatcgac
gagaaaaagaattcgaagatcaggaagagcaggaaagcgaacgaggagattgtcacgcaa
cgagcaaagcggtttatcatgtctggggcgagcgttctcggcgtcctggggcacggctgc
gcccacattctcccaccgattgccgctccatccgcgaggatccacaacagggcgctcgga
ttctccgtcaggtcgagccgcagcgtcgcgtcgccgatggcaaatcttgggggatggctg
tccaagctgggagtagggcgcgcgactgccagggttcgcgatccggaaggcgccaagatc
gcgcaggggccggacgacgacgcgcctgcgcccgggcaagaattcgcgcaatttggcgcc
ggatgcttctggggtgtggagctcgcattccagagaatcccgggcgtgacgaaaacagag
gtaggctattcccagggcactgtgcacaatccctcgtacgaggacgtttgcaatggcgat
accgggcactcggaggtggtgagagtgcaatacaatccaaaggagacgagcttctcctcg
ctgctggatgttttctgggaccgccacgatccgaccactttgaatcgtcaggggaacgat
gttggcacccagtacaggtcgggaatctacttctaccacccggaacaggagaaagccgcc
cgagagtccatgcaaaagcacgaggaaaagatcaagaggaagatcgtgacggaaatcttg
ccagctacaaagttttatcgcgccgaagagtaccaccagcaatacttggccaagggtggc
agatctggcttcaggcagtcagctgaaaagggctgcaacgatcctatccgctgctatggt
tag
DBGET
integrated database retrieval system
