Selaginella moellendorffii: SELMODRAFT_43856
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Entry
SELMODRAFT_43856 CDS
T01496
Name
(RefSeq) hypothetical protein
KO
K18655
ATP-dependent RNA helicase DDX19/DBP5 [EC:
5.6.2.7
]
Organism
smo
Selaginella moellendorffii
Pathway
smo03013
Nucleocytoplasmic transport
smo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
smo00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
SELMODRAFT_43856
03015 mRNA surveillance pathway
SELMODRAFT_43856
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smo03019
]
SELMODRAFT_43856
Enzymes [BR:
smo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SELMODRAFT_43856
Messenger RNA biogenesis [BR:
smo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
SELMODRAFT_43856
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Motif
Other DBs
NCBI-GeneID:
9638703
NCBI-ProteinID:
XP_002993773
JGI:
43856
UniProt:
D8TDV0
LinkDB
All DBs
Position
Unknown
AA seq
367 aa
AA seq
DB search
LVEGNSLYTSAKTFEELKISEPLLRGIYSEMKFERPSKIQAETLPLIMNPPHRNLVAQAH
NGSGKTTCFVLGMLSRVNTSLHEPQALCVCPTRELALQNQAVLERMARFTDIKSTCIIPP
TESIRSSLLGHIVDQVIFGTPGSLERAIVNERNLDVQHLKVLVFDEADHMLDQNGFRDFS
MKLLRRINKQAPSCQLLLFSATFSEKVKNFVSKSIPIANRVFVEKLELSLDVIKQYRVDC
PSEAAKFEVLKDRIFPIAEKLGQSIIFAKSQRSVTELHEKLEADGHKCSSIQGGYSPDLR
DKIIDEFRQGITRILISTDVLSRGFDVAQVTLVVNFDLPVTRDYPKQPDYETYLHRIGRS
GRFGRKG
NT seq
1101 nt
NT seq
+upstream
nt +downstream
nt
ctcgtcgagggcaacagcttgtatacctcggccaagacgtttgaggagcttaaaatctcc
gagccgctgctgagagggatctactccgagatgaagtttgagaggccgagcaagatccag
gccgagacgctgccgctgatcatgaatcccccgcatcgcaatctggtggctcaagcgcac
aatggctctgggaaaactacatgctttgttctcggcatgctaagtcgcgtcaacacttct
ttgcacgaaccccaagctctgtgcgtttgtccaacacgagagttggcactccagaaccaa
gcagtgctcgaaagaatggcacgcttcactgatatcaaatcgacctgtatcatacctcct
acggaaagtatcaggagctcactcctcggacatatagtcgaccaagttatctttggaact
cctgggtctttggagagggctatcgtcaacgagagaaacttagacgtgcaacacttgaaa
gttttggtgtttgatgaggctgatcatatgctagaccagaatgggtttcgtgacttttcc
atgaagctattgcgacgcatcaacaagcaagcaccgagttgccagctcttgctgttctct
gcaactttcagcgaaaaggtgaagaatttcgtgtccaaaagcatcccgatagcaaaccga
gtattcgtcgaaaagctcgagctctcgctggacgtcatcaagcagtaccgtgtagattgc
ccctctgaagctgccaagtttgaggttctcaaggatagaatcttccccattgccgagaag
ctcggacagtcgatcatcttcgccaagagccaacgtagtgtgaccgagctgcacgagaag
ctggaagcagacggtcataagtgcagttctatccagggaggatatagtcccgacctccgt
gacaagatcatcgacgagttccgacagggaataaccaggatcttaatctcaactgacgtt
ctttcgagggggttcgatgtcgcgcaggtcaccttggtcgttaacttcgatcttccagtc
acgcgggattatcccaagcagccggactatgaaacttatctacaccgcatcggccgaagt
ggaagatttggaaggaaaggt
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