Selaginella moellendorffii: SELMODRAFT_439561
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Entry
SELMODRAFT_439561 CDS
T01496
Symbol
TIR1B-1
Name
(RefSeq) hypothetical protein
KO
K14485
transport inhibitor response 1
Organism
smo
Selaginella moellendorffii
Pathway
smo04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
smo00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
SELMODRAFT_439561 (TIR1B-1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
smo04121
]
SELMODRAFT_439561 (TIR1B-1)
Ubiquitin system [BR:
smo04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
SELMODRAFT_439561 (TIR1B-1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Transp_inhibit
F-box_5
DUF7885
LRR_At5g56370
F-box-like
F-box
LRR_At1g61320_AtMIF1
Motif
Other DBs
NCBI-GeneID:
9652331
NCBI-ProteinID:
XP_002966544
JGI:
439561
UniProt:
D8R5Z3
LinkDB
All DBs
Position
Unknown
AA seq
633 aa
AA seq
DB search
MVYEFPDDILEHVLVFLSSHRDRNSVSLVCKSWYKAEAASRANLFIGNCYSVSPELVARR
FPKVRSLTLKGKPRFADFNLLPPHWGAYLLPWIVTFAHASLPLEELRLKRMCVSDEALDL
LATSFPGFRVIVLNNCDGFSTKGLASIARNCRNLQELNLQESLVEDHSSVDWISAFPDST
TSLLALHFSCLDAAVDFDALDALVARNPQLRSLGLNKKVALWQLQKLLHRCGPQLTDLGT
GSMSGIGNLNGGGAVGVGGLPLPLPQQLQAQMQVQVQVQPPQPAPEQQEMIQWERIQDLG
ACLSSCTKLQSLSGIWEAEPPCLIALYPVCLNLLSLNLSYANLRNADLLQLLSHCHKLQR
LWLQDNVEDAGLRIVANTCKDLRELRVFPADHEGVGVVTEQGLLAISEGCANLSSILYFC
RRMTNSAITAMSRACSKMRRFRLCIITTRQPDHVTGEPLDEGFGAIVKNCKELKRLAVSG
LLTDRAFQYIGEFGKNVETLSVAFAADSDVGLEAVFRGCTKIRKLEIRDCPFGDRALLAG
LERYETMRFLWLSGCRVSIAGCDELSKKLPWLNVELVKESTEDEYTVDMLYVYRTVMASA
RSDRPPSVIGLRGGEYFWRWVRGAAVGTSNSSI
NT seq
1902 nt
NT seq
+upstream
nt +downstream
nt
atggtgtacgagttcccggacgacatcctcgagcacgtcctcgtcttcctctcctcccac
cgcgatcgcaactcggtgtcgctcgtctgcaagtcgtggtacaaggccgaggccgccagc
cgcgccaacctcttcatcggcaactgctactcggtctcgccggagctcgtcgcgcgacgc
ttccccaaggtgcgctccctcacgctcaagggcaagccgcgcttcgcggatttcaatctc
ttgcccccgcattggggagcctacctcctgccatggatcgtcaccttcgcgcacgcgtca
ctcccgcttgaggagctccgcctcaagcggatgtgcgtgagcgacgaggcgctcgatctc
ctcgccacctccttcccaggcttccgcgtcatcgtgctcaacaattgcgacggcttcagc
accaagggcctcgcctccatcgccaggaactgccggaacttgcaggagctcaacctccag
gagagcctggtggaggatcacagcagcgtggactggatcagcgccttcccggacagcaca
acctcgctcctcgcgctccacttctcctgcctggacgcggcggtggacttcgacgccctg
gacgcgctggtcgcccgcaacccgcagctccggagcctgggcctcaacaaaaaggtggcg
ctgtggcaattgcagaagctgctccaccgctgcgggccgcagctcacggatctgggcacg
ggctcgatgagcggcatcgggaaccttaacggcggcggagcagttggcgtaggcgggctt
ccgcttccgcttccgcagcagcttcaggcgcagatgcaggtgcaggtgcaggtgcagccg
ccgcagccggctccggagcagcaggagatgattcagtgggagcggattcaggacctgggt
gcgtgcctctcgagttgcaccaagctgcagagcttgtccgggatctgggaggcggagccg
ccgtgtctcatcgcgctctacccggtttgcctcaacctcctctcgctcaacctcagctac
gccaacctccgcaacgcggatctcctccagctgctcagccactgccacaagctccagagg
ttgtggctccaggacaatgtcgaggacgcggggctgcgcatcgtggccaacacctgcaag
gatcttcgcgagctgcgggtgttcccggcggatcacgagggcgttggcgtggtgaccgag
caaggcctgctcgccatctccgagggctgcgccaacctctcctcgatcctctacttctgc
cgccggatgacgaactcggccatcactgccatgtcgcgcgcctgctccaagatgcgccgc
ttccgcctgtgcatcatcaccacccggcagccggatcacgtcacaggcgagccgctggac
gagggattcggcgccatcgtcaagaactgcaaggagctcaagcgcctcgcggtctcgggc
ctgctcaccgatcgcgccttccagtacatcggcgaattcggcaagaacgtggagacgctc
tcggtggcgttcgcggcggacagcgatgtgggactggaggcggtgttccggggatgcacc
aagatccgcaagctggagatccgcgactgcccgtttggcgatcgcgcgctcctggcgggg
ctggagcgctacgagacgatgcgcttcctctggctctcgggctgccgggtgagcatcgcc
ggctgcgacgagctgtccaagaagctgccatggctcaacgtggagctcgtcaaggagagc
acggaggacgaatatacggtggatatgctgtacgtctaccgtacggtgatggcgagcgcg
aggagcgaccgcccgcccagcgtcattgggctgcgcggcggggagtacttttggcggtgg
gtgcgcggcgccgcggtgggcacgtccaattcgagcatctag
DBGET
integrated database retrieval system
