Selaginella moellendorffii: SELMODRAFT_441578
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Entry
SELMODRAFT_441578 CDS
T01496
Name
(RefSeq) hypothetical protein
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
smo
Selaginella moellendorffii
Pathway
smo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
smo00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
SELMODRAFT_441578
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smo03019
]
SELMODRAFT_441578
Messenger RNA biogenesis [BR:
smo03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
SELMODRAFT_441578
U7-dependent histone pre-mRNA processing factors
SELMODRAFT_441578
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
RMMBL
Lactamase_B_2
Lactamase_B
Anti-Pycsar_Apyc1
RILP
Motif
Other DBs
NCBI-GeneID:
9639999
NCBI-ProteinID:
XP_002971541
JGI:
441578
UniProt:
D8RKS9
LinkDB
All DBs
Position
Unknown
AA seq
721 aa
AA seq
DB search
MGTSVQLTPLAGAHSEGPLCYLLQVDDFRFLLDCGWNDVFDVSLLQPLVSVAPTIDAVLL
SHSDTLHLGALPYAIAKLGLNATVYCTHPIRSMGHMQMYDHCLSRTAVSHFDLFSLDDVD
TAFSNTCPLKYSQHFPLQGKGQGITITPFPAARLLGGTIWKITKDTEDIIYAVDFNHRKE
RHLNATVLESFTRPAVLITDAYNALNSQPVRRQRDQEFLDIILRTLRSSGNVLLPVEPSG
RVLEIILYLDQHWSQHRINVPLVFLTYVVGSVTDFVKSSLEWMNDAIGKAFEQNRENPFA
LRSVKLCTSRKQLDELPPGPRVVLASMASLETGFAKELFLEWAVDPKNLVLFTERAQVGT
LARQLQVEPPPKIVKITISKKVLLVGEELEAYEREQSRLREEARNAASQQEPVQPASSSD
DLMPSAPDESSTPSEGKQQAVTVHHDIFIDGFTVPADTVAPMFPVYDDSNERDEYGEIIN
PDDFVIKEEFMDYSQTQANANNIKLETEGDTSAEKPSKVVTTDTAVVPLCALTFMDFEGR
ADGRSIKSILAHVAPLKLVLIHGSAESTEHLKQHCLKNVCPFVYTPRVGENMNVTSDLNA
YKLRLTERIMSSVLFRKLGDYELAWVDGEIGQNEEDLLPLLPLDGTPPPHKTVFVGDLRL
ADFKQLLATKGIQAEFAGGVLRCADNIAVRKSGGQQLVIEGSLSDDYYKVRELLYSQYHI
V
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atggggacgagcgtccagctgaccccgctcgccggcgctcactccgaggggccgctctgc
tacctcctccaggtcgacgatttcagattcttgctggattgcggctggaacgatgtcttc
gatgtctctctcctccagcccctcgtcagtgtcgctcccacgatcgatgctgttcttctc
tcccattctgacacgctgcatctcggagcgctaccctacgcgatcgcgaagctgggactc
aatgcgaccgtctattgcacgcatcccatccggtccatgggccatatgcaaatgtatgat
cattgcctctcgcgaactgctgtgtcgcattttgatctcttcagcctggatgatgtagac
actgccttctcgaacacctgtcctctcaagtactctcaacattttcctcttcaaggcaag
gggcaaggcattaccatcacaccgtttccagcagccagacttttaggcggaactatctgg
aaaatcactaaggacacggaagacatcatatatgctgtcgatttcaaccatcgcaaagaa
aggcatttaaatgcaacggttttagagtccttcactaggcctgcagtgcttattacggat
gcttacaatgctctcaattctcagcctgtgcgccggcaacgagatcaagaatttctggat
attatcttgaggactctacgctcctctggaaatgttcttttgcctgtcgaaccgtctggt
cgggtattagagattattttgtacctggaccagcattggagccagcaccgaataaacgta
cccctcgtttttcttacgtatgtggtcggcagcgtaactgactttgttaagagctcgctt
gaatggatgaatgatgctataggaaaagcattcgaacagaatcgtgagaatccattcgca
ctaagatccgtgaaattgtgcacctcacgaaaacagcttgacgagcttcctccaggaccc
agggttgttcttgcatccatggcgagcttggaaacaggatttgcgaaagaattgtttttg
gagtgggctgtagatcctaaaaatcttgtactttttacggaacgggctcaggttggaaca
ctagcgcgtcagctacaagtggagcctccgccaaagattgtgaaaatcaccatcagcaag
aaagtccttcttgtcggtgaggagctggaggcttacgagcgtgagcagtcgcggctcaga
gaggaagcaaggaacgcagcttctcaacaggaaccagtccagccagcttcttcaagcgac
gacctgatgccatcggctccggacgagtcaagtacaccatcagaagggaaacagcaagcg
gtcactgttcatcatgatattttcatagatggtttcacggttccggctgacaccgtagca
cccatgttcccggtttatgacgatagcaacgaacgtgacgagtatggggaaattattaac
cctgatgactttgtgattaaagaagagtttatggactactcccaaactcaggctaatgca
aataatataaagctagagacagaaggagacacctctgcagaaaagccgtcgaaagtcgtc
acgactgatacagcggtggtcccactgtgtgcgctgacattcatggattttgagggccga
gccgatggacgatcgatcaagtcgatattggcccatgtagctcccttgaagctggttttg
atccatggatccgcggaatctaccgaacacttgaagcagcactgcctcaaaaatgtctgt
ccgttcgtctacactccacgggttggtgaaaatatgaacgtcacttccgatctcaatgcg
tataagctgaggctgacggagcgtataatgagcagcgtcctcttcagaaagcttggagat
tacgagctagcgtgggttgatggagaaatcggacagaatgaggaggacttactcccactt
ttgcctctggacggaacgccacctccacacaagaccgtctttgttggggatttgcgcctt
gctgatttcaagcagctattagccaccaaaggcatccaggcagaatttgccggtggtgtt
ctccgttgcgctgacaacatagccgttcgcaagagtggaggacagcaactcgtaatcgag
ggatctttgtctgacgactactacaaagtccgggagctgctctactcacaataccacata
gtgtga
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