Selaginella moellendorffii: SELMODRAFT_442688
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Entry
SELMODRAFT_442688 CDS
T01496
Name
(RefSeq) hypothetical protein
KO
K06100
symplekin
Organism
smo
Selaginella moellendorffii
Pathway
smo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
smo00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
SELMODRAFT_442688
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
smo03021
]
SELMODRAFT_442688
03019 Messenger RNA biogenesis [BR:
smo03019
]
SELMODRAFT_442688
Transcription machinery [BR:
smo03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
SELMODRAFT_442688
Messenger RNA biogenesis [BR:
smo03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
SELMODRAFT_442688
U7-dependent histone pre-mRNA processing factors
SELMODRAFT_442688
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
Motif
Other DBs
NCBI-GeneID:
9637837
NCBI-ProteinID:
XP_002974966
JGI:
442688
UniProt:
D8RVC1
LinkDB
All DBs
Position
Unknown
AA seq
1167 aa
AA seq
DB search
MAVPPEARERAVALLHDAQLHPDAAAKLDSLRELRELALHREPRLLPELLPVLLELRNDR
ASAIRNFLVERGSQCRVIFLAPRIIEEVGLRQVEYVPVMMPVLLTLLRGEPAFARRAITA
GTNLFRHTLEYVLLKGIYTRQVDKFMQDSWISVLQFKEFVYPFAQQHGNDGVRLHAVKFI
ETVILLFTPDPSGPSQPPLPDRLDGTSKGINVSWIVSGHPLLDATAMGQEASKSLGLLLN
QLRQPDVSALPGPVAIVIVNSGFLFGKGMSSLAAIAKRRPSFYGRILPVLLSLGPSCEAI
KGGQVASVVTALKNAFVQLLKCTYPAAAPWRDRLTSALRQMNAGDVADLAVERSSRGGER
ESRESSSRSNREERQDPRNKRPPPQENGNDEESYGKRLRTTPPPPVQQHFHPDASGYANG
AGLPPIQQMIQMFEALAAKGEIASIDLLMSRLPPDTLADVVIVNMQNLPPSVPADFMDKP
QLLPPPPPPPPIEPVAMDGRRDPRRDPRRMDPRMDPRRLPSPGPPMVMPKQEDLQQPGVP
PVFRTVKAEPVSPPVMNSRDPRASLKATSVKMEPTFTHVKSEPDEDMGIRTISTMYGALY
PSSDALDDRQEAGTSGAGLSSFLPVSAEALNTLQKHILADYANHMGHELALHVFYELYLM
HIAGGDSIEKYENFFVSLSQGLKDSLPPSDKSLSKLLCEIPLFPEGAFALLESLCNPINE
PNGDRVTQGLSALWSLILQRPAVRERCLNMALECAVHEVDDARTKAIRLVANKLYPVTFI
SQKIEEFATKMLLSVVNVGGHNVDSEAQERSTLQEVAPGDQEANAADGGGTKAEAQRCMS
LYFALCTKKHALLGELFNVYDRAPKPVKQAIHRQIPVLVRTVGQSSPELLSIISAPPQGC
ENLLLQVLHVLTEGTTPSPELIKTIKQLHETRIKDAVFLIPILSSLSKEEVLPIFPRLVD
LPPDKFQVALARILQGSAHTGPALTPAEVLIALHGIDQQRDAVPLKKVTEACSACLQQRN
VFNQDVLAKVLNQLVEQTPLPKLFMRTVIQAVGTFRSLVGFVMDILLRLVNKQIWKTPQL
WVGFLKCASETTPHSFRVLLQLPTAQLENALVKHPTLKTPLAAHASQPSVRSSVPRSSLV
LLGVIQDDVTAVEAASAPSSSGNAPQQ
NT seq
3504 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcctcccgaggcccgcgagcgcgccgtggcgctcctccacgacgcccaattg
catcccgacgccgcggccaagctcgattctctccgggagctcagggagctggcgcttcac
agggagccgcggcttctcccggagctcctgcccgtgctgctggagctgcgcaacgatcgc
gccagcgccatccgcaactttcttgtcgagcgcggctcacaatgtagggtgatctttctt
gctcccaggatcatcgaggaggtcgggctcaggcaagtggagtatgttccggtgatgatg
ccagtgctcttgacattgctccggggcgagccggcctttgctcggcgtgctatcactgct
ggtaccaatttgtttcgccacaccttggagtatgtcttgttgaaggggatttatacgagg
caagtggataagttcatgcaagattcttggatttcagttcttcagttcaaggagtttgtg
tatccctttgctcagcagcatggcaacgacggggtacgtttgcacgctgtgaagtttatc
gagactgtgattttgctcttcactccagaccctagtggtccttcgcagccaccgctaccg
gatcgactcgatggaacgtcaaaagggataaacgtgtcctggatagtgtctggccatcca
ctcttagatgccacagccatgggtcaagaggcgagcaaatcgttgggattgttgctgaac
cagctgcggcaacctgacgtttcggctcttccgggtcccgtcgccattgtcatcgtgaat
agtggattcttatttgggaagggaatgagcagcttggcagccattgcgaaacgaagaccg
tcgttttacgggcgcatccttcctgtgttactttcactgggaccaagttgtgaagcgatc
aaaggtggtcaagtggccagcgtggttactgccttgaagaatgcctttgtccagcttcta
aaatgcacgtatcctgcggcagcaccgtggcgcgatcgtctcacttcggcactgcgccag
atgaatgccggagacgttgcagacttggcagtcgagagaagcagcaggggtggcgaaaga
gagtcgagagagtcgagttcccgctccaaccgagaagagagacaggatccacgaaacaag
agacccccaccgcaagaaaatggcaatgacgaagaaagctatggaaaacgcttgcggact
actccgccgcccccggttcagcagcattttcacccggatgcatccggatacgcgaatgga
gcgggtctacctcccatacagcagatgatacagatgtttgaggcacttgcggccaaagga
gaaatcgcttcgatcgacttgctcatgtcgaggctccctcctgatactctggctgatgtc
gtgattgtcaacatgcaaaatcttccaccgtctgttcctgcggacttcatggacaagccg
cagctattgccgccgcctccgccgcccccacctatcgagcccgtggctatggatggcaga
cgagatccacgaagggatccccgccgtatggatccccgtatggatccccgtcgcttacca
tcgccaggtcctccaatggtgatgccaaagcaggaggacttacagcagccaggagtgcct
cctgttttcagaactgtgaaggcagagcccgtgtctccgcctgtgatgaacagcagggat
ccaagagcttccttgaaagctacgtccgtgaaaatggaaccgacgtttacgcacgtaaag
tcagaaccggacgaggatatggggattcggaccatctcaacgatgtatggtgcactgtat
ccttctagtgatgcccttgacgatagacaagaagcaggaacttccggggctggtttgtcc
agcttccttcctgtgtcggctgaggctttgaatactttacaaaagcacatacttgcggac
tatgcgaatcatatgggtcatgaacttgcgctacacgttttctatgaactgtacctgatg
cacatagctggtggagatagtatagagaaatacgaaaacttttttgtatctttgagccag
gggttgaaagattcgctacctccgtcagacaagtctttgagcaagctgttgtgcgagatc
ccgttgtttccggagggagcatttgcgctcttagaaagtctttgtaatccgatcaatgag
cccaatggtgatcgcgttacacagggcttaagcgctttgtggagtctcatcttgcaacgt
ccggcagttcgggagaggtgtttaaatatggctttagagtgcgctgtgcacgaggtcgat
gacgctcgaacaaaggccattcgtttggttgcaaataaactgtaccctgtgaccttcatt
tcacaaaaaattgaagagtttgccactaaaatgctattatctgttgtaaatgtcggagga
cataatgtagacagtgaagctcaggaacggagcacgctacaggaagttgctcccggcgat
caagaagcgaatgcagccgacggcgggggaaccaaagcagaagcccaacgttgtatgtca
ctttattttgctctttgtaccaagaaacatgctcttttgggcgagctattcaatgtatac
gatcgagcaccaaagccagtaaagcaagcaattcatcggcaaatacctgttctagtccgg
acggtcggacaatcttccccagaattactaagtatcatctccgctcctccacagggctgc
gaaaacttgttactacaggtcctacatgttctgactgaaggaaccacgccatcgccggaa
cttatcaaaacgataaaacagctccacgagaccaggataaaggacgcggtatttctgatc
ccaatcttgtcgtcactttcaaaagaagaggttcttccaatttttccgcggttggttgat
ctaccaccggacaagtttcaagttgcactggcgcgtatcttgcagggctctgcgcacaca
ggtcctgctttgacacctgccgaagtgctcattgctcttcacggtatagatcagcaacgt
gatgcagttcctttgaagaaggtcacggaagcttgctcggcatgcttgcaacagcgaaat
gtcttcaatcaggacgttttagcgaaagtcttgaatcagttggtggaacaaacacctctt
ccaaagctatttatgcgaactgtcattcaagctgttggaacgtttcggtctttggtgggt
ttcgtcatggatattctactcagacttgtcaacaagcagatctggaagactcctcaatta
tgggttggattcctcaagtgcgcgagcgaaaccacaccgcattcctttcgtgtcttgcta
cagcttccaaccgcgcagctcgagaacgctctcgtgaagcatccaacgttgaaaacgccg
ttggccgcgcatgcgagccagccgagtgtccggtcctccgttcccaggtcgtcgctggta
ttgcttggagtgatccaggacgacgtaacagcggtcgaggcggctagtgcgccatcatcg
tcagggaatgctccacaacagtga
DBGET
integrated database retrieval system
