Selaginella moellendorffii: SELMODRAFT_444049
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Entry
SELMODRAFT_444049 CDS
T01496
Name
(RefSeq) hypothetical protein
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
smo
Selaginella moellendorffii
Brite
KEGG Orthology (KO) [BR:
smo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
smo03036
]
SELMODRAFT_444049
Chromosome and associated proteins [BR:
smo03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
SELMODRAFT_444049
microRNA pathway
RISC loading complex
SELMODRAFT_444049
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
Dicer_dimer
DEAD
ResIII
Helicase_C
PAZ
CLASP_N
XMAP215_CLASP_TOG
CEP104-like_TOG
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
9659547
NCBI-ProteinID:
XP_002979043
JGI:
444049
UniProt:
D8S6V8
LinkDB
All DBs
Position
Unknown
AA seq
1686 aa
AA seq
DB search
MAGGIVKKNQQQQQAPAVLGKINDENRPPVQEVEYILSRDLKPLKDPETQLKVGFYGADL
WGCAFLLTALLVADPGSKARLRRLAHRVRGAESSAPDLHLPVGFAPPRAVSGSRSDISDW
WIDDRCRRRRENVMTLVLKAVKNPRSALCKTAIMACSDLFQAFQDQVLEMLDPLLLQLLL
KASQDKKFVCEEAEKALLGMTTWISPVSLIHKLQPYTTHKNPRVRAKSATCISKSVAKLG
AEGIRDYGLEALMQIAAAQLIDQLPEARESARKLVVELHSAFQQQPDVSSNLSETSSSSS
GSDSDDQNQKSWEEFCSSILTPAVAQPILRVSTRAFQTGVFGVMDCAKRAKTMIPRGYQK
DVFQRALKENIIVNLGTGTGKTMIAIMLIQSFEDRLSMPQEKRIAVFLAPTVNLVIQQAR
AIESFTVLKVGDYYGDKGVDSWSVKQWQAEVDSHQVLVMTPQVFLNALGTSALKLEFVEI
LVMDECHHAHKNHPYALIMKTHYHVSCLKSKPKIFGMTASPVIQKGVSSSYDCNCKLTVL
ESILDAKVYTVEDKSEIEEYYPNPTQYKEYYDRPKQSFSSIQTDLEILKDRLNSEAACNC
SEYEQQNKINKSIDRLLLSINHCLVDLGLLPALLAVEILKSRNKSTFHLKWKPDVSLEEE
EVKTSLKERFLQNVSSIPRFSQVSSRSYPTLEEMTSGTLSPKVLVLLDVLERLRGMTNMR
CIVFVERVIVAMALAKLISGLSFLSHLRCDYMTGVRDTDARNPTQQQEVLHSFAGGKLNL
LIATSVAEEGLDVQACCAVIRFDVCQTLRSHVQSRGRARNLLSTYVWLLETGNVEQLNLF
NQLCTSERVVEDQVIFRNYMDITREAPPEGDLEFFRVESGACKSSQDSVSFIHEYCARLG
DRYYNAKPKFSFKDSFVCTVEFPPNAPLRSVEGPLRRTEQLAKKAACLQACRKLYDMGEV
RRDTLCPDVDDFDEEDQPMRKNESGKRKEIFSTAKPLIFEGSWVFNESGVQLQFYKICFV
VEPPESRTYSNFGFLVNCVIDAEVTDSEVTLFSRNRVVNARVHRVGPIQLDANQVKAAKA
YQELLLNGAFNRLARCSGSPQEILWDKSQAFLVLPVHDDNDSIDWTSVHATAWVYRTLCS
NFSPSSPMDGDGVGEKTHADMLCTANGYVHSSALQDMVVATVHNGRLFCVTGVLENFTAA
SLLPKRGFTYIDYYKDKYQRTLRLPEQPLLKAKPTHAFHNLLIRPKEQEGSRQEESFVEL
PPELCLCLEIKSGLIRSLYFVPSFLHRFTSTVCAIQLRSPLWPWIPAAKILEAITSKKCH
EEFSYESLELLGDSFLKYVVTQKLFLVYDKKHEGQLSARRSRATCNAALYQLAKSSGIAE
YIRDEEFNPSNWTGPGMLTSDSSKCRHQQGSFENEENYFSSCASGHRGIRRKALADVVEA
LIGAYLATSGPPSAMELMKQLDIDIEFDIGLLASARQASLPAESFQHLQASLESLEHKLQ
YKFQNRSLLVEAITHASQPNCLLCYQRLEFLGDGVLDFLVSRHLFETHPGLPPGTLTDLR
SAAVNNKWFARLVVRHGLHQHLQHGSVELDCEIRKFVQNVKEKPDASCFEDLSAPKVLGD
LLESITGAIFVDTNFDLERLWRVVLPFVIASGHSSDAAFPSCAHSHGALREKRHDSQFLP
DRGDHD
NT seq
5061 nt
NT seq
+upstream
nt +downstream
nt
atggctggaggaatcgtcaagaagaatcagcagcagcagcaagcgccagcggttctaggc
aagatcaacgatgagaatcggccgccagtgcaagaagtggagtacattctttccagggat
ctcaagccgctcaaagatcccgagacgcagctcaaggtagggttctatggcgcagatcta
tggggatgtgcattcttgctcacggcattgctggtggcagaccctggcagcaaggctcgg
ctccggagattggctcaccgtgtgcgcggcgctgaatcaagtgcgccagatctccatctt
ccagtcggatttgctcctccccgtgctgtgagtggttctagatctgatatttcggactgg
tggattgatgatcgatgccgccgccgcagggagaatgtcatgaccctagtcttgaaggcc
gtgaagaatcctcgcagcgcgctgtgcaagacggcgattatggcatgctcggatttgttc
caggcgtttcaagatcaagtgctcgaaatgctcgatcctctgttgctccaactattgctc
aaagcatcacaagacaagaaattcgtttgcgaggaagccgaaaaggctctcttgggaatg
actacctggatatcgcccgtctctttgatccacaagctccagccgtatacgacgcacaag
aacccccgcgtccgtgcaaagtcggcaacatgtatctccaagagcgtcgccaaactcggc
gccgaaggcatcagggactacggattggaagctttgatgcaaatcgccgctgcgcagctc
atcgaccagctccccgaggctcgcgaatccgctcgtaagttggtggtggagctccactcg
gccttccagcaacagccggacgtgagctccaatctctccgagacgagcagcagcagcagt
ggcagtgactccgacgatcaaaaccagaaatcctgggaggagttttgttccagcatcctc
actcccgcggtggcgcagccgattcttcgcgtcagcaccagggcttttcagacaggggtt
tttggcgtcatggattgcgcgaagcgggccaagacgatgatcccgcgcggctaccagaaa
gatgtgttccagagggcattgaaggagaatatcatcgtcaatctcggcactggaacgggg
aagacgatgatcgcgatcatgctcatccagagcttcgaggacaggctgtccatgccccag
gagaagcgaattgcggtgtttctagcaccaacggtgaatttggtgatccagcaagctcga
gctatagaatcctttacggtgctcaaggtcggtgactactacggtgacaaaggagtcgat
tcttggagcgtcaagcaatggcaggcggaggtggattctcatcaagttctggtgatgacg
cctcaggtgtttttaaatgcgctcgggacttctgcgctgaagctcgagtttgtggaaatc
cttgtcatggacgagtgtcatcacgcccacaagaatcatccatacgcgctgattatgaag
acgcactaccacgtttcttgtctcaaatcaaagccaaagatatttggaatgacagcttct
cctgttattcagaaaggtgtatcatcaagttatgactgcaattgtaaattaacggtctta
gaaagcattctggatgccaaggtgtacacagtggaagataagtccgaaatagaagagtat
tatccgaatccgacacaatataaggagtactatgacagaccgaaacaaagcttctccagt
atacaaactgatctagaaatactaaaagaccgcctaaattctgaagctgcgtgtaactgt
agcgaatatgagcagcagaacaaaataaacaaatctattgacagacttcttctgagcata
aaccactgcctcgtagacctgggccttctacctgcgcttctggcagtggagatactcaag
agtcgcaacaaaagtacttttcatttaaaatggaagccagatgtctcgttggaggaggag
gaggtgaaaacgagcttgaaagagcgtttcttacaaaatgtttcttcaataccaaggttt
tctcaagtatcttcgcgctcttatccgaccttagaggaaatgacttcaggaacattaagc
ccgaaagtactggtactattggatgtgcttgaaagattgaggggcatgacaaacatgcgt
tgcattgtctttgtggaacgtgtgattgtggccatggccttagccaagctcatatctggg
ctttcgtttctttctcatctccgttgtgattatatgactggtgtgcgtgatacggatgca
agaaatccaacccagcagcaggaggttctacactcttttgcaggtggcaagcttaatctg
ctaatagcgacctcagttgcagaagaaggtcttgatgtccaggcatgctgcgctgtaatc
agatttgacgtatgccaaactttgcgaagccatgttcaatcccgaggacgtgctcgaaac
ctattatcaacttacgtatggcttctggaaacggggaatgtagagcagctgaacctgttc
aaccagttgtgtacaagcgaaagagtggtggaagatcaagtaatcttccgaaattatatg
gatattacgagagaggcacctccagaaggtgacctggagtttttccgtgtggaatcaggt
gcttgtaaaagttcgcaggacagcgtgagcttcattcacgagtattgtgctcgtcttggt
gacaggtactacaatgcaaaaccaaagttttcgttcaaagattcgttcgtctgcactgtg
gaatttccacccaacgctcctctgcgttcagtagaaggtcctctaagacgtacagaacag
ctcgcgaaaaaagcagcgtgtttgcaagcatgccggaaactttatgacatgggagaagtt
agacgtgacacgctttgcccagatgttgacgatttcgatgaagaagaccagccgatgcgg
aagaatgaatcaggaaaacgcaaggagatcttctcgactgcaaagccactcattttcgag
ggaagctgggtgtttaacgagtcaggggtgcagttgcagttttataaaatctgcttcgtg
gttgagccacctgaatcacgaacatactcaaactttggatttctggtaaattgcgtcatt
gacgcagaagtaaccgattctgaagtgaccctgttctcaagaaatagagttgtcaacgct
agagtacatcgcgtcgggccaattcagctggatgccaatcaggtaaaggcagccaaggca
tatcaagagctactgctcaacggagctttcaaccgtttggcacgctgctcgggaagtcct
caagaaatcctctgggacaaatctcaagcgtttcttgtgctacctgtgcatgatgacaac
gatagtattgattggacgagtgttcatgcgactgcgtgggtatacaggacactttgtagt
aatttctcaccatcttctccaatggatggggatggtgtgggggagaagacgcacgcggac
atgctctgcactgccaatggctacgtacattcttctgcgctccaggacatggtcgtagct
accgtgcacaatggcaggcttttctgtgtcacaggggttctagagaattttactgcggca
tcactactaccgaagagaggcttcacgtacatagattattacaaagacaagtatcaaagg
acgttacggcttccagagcagccattgctgaaagccaagcctacgcatgcttttcataat
ctcctcataagacccaaggaacaagaaggttctagacaagaagaaagttttgtagagcta
ccacctgagttgtgcctgtgcctagagattaagtccggactaattcgatcgctatacttc
gtcccttcgtttcttcaccggtttacttcgaccgtctgtgccatacagttgcgctcacca
ctgtggccatggattcctgcagcgaagatcctcgaagcaattaccagcaaaaaatgtcac
gaagagttctcatatgagagtttggagcttctaggggactcgtttctcaaatacgtcgtg
actcaaaagctgttcctggtctacgataagaaacacgaaggccagctcagtgcgagaagg
tctcgcgctacttgcaatgcagcgctatatcagttggcaaaatcatctggcattgcggaa
tacatacgagacgaagaattcaatccttccaactggactggcccgggcatgcttacctct
gattcatcaaaatgtaggcaccagcaggggagctttgaaaacgaggaaaattatttttca
tcttgtgcgagcggccatcgggggattcgaaggaaagctctcgccgacgttgtagaggcc
cttatcggtgcatacttggccacctctggacctccgagcgccatggagcttatgaaacag
ctcgacattgacatagaattcgacataggcttgcttgcctcggctcgccaagcttccctg
ccggctgaatcgtttcaacatctccaggcctcgttggagtctttagagcataagctgcag
tataaatttcaaaacaggagcctcttggtggaagctataactcacgcatctcaaccgaac
tgcttgctctgctatcagaggctagagttccttggcgatggcgtcctggacttccttgta
tcccgccacctcttcgagactcatccaggattacctccaggaacactcactgacttgcgg
tctgcagccgtgaacaacaaatggtttgctcggctggttgtgaggcacggcttacatcag
catcttcagcatggctcggtggaacttgactgcgagatccgaaagttcgtgcaaaacgtg
aaggaaaaaccagacgcttcatgcttcgaagacttgtcggccccaaaggtgcttggagac
ttacttgaaagcataaccggtgccatatttgtggacactaacttcgatttggagaggttg
tggagagtggtgctgccctttgttatcgcctctggtcactccagcgacgctgcgtttcca
tcctgtgcgcattctcatggagctttgcgcgagaaaaggcatgacagtcagtttcttccg
gacagaggcgaccacgactga
DBGET
integrated database retrieval system
