Selaginella moellendorffii: SELMODRAFT_446187
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Entry
SELMODRAFT_446187 CDS
T01496
Name
(RefSeq) hypothetical protein
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
smo
Selaginella moellendorffii
Pathway
smo03013
Nucleocytoplasmic transport
smo03015
mRNA surveillance pathway
smo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
smo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
SELMODRAFT_446187
09122 Translation
03013 Nucleocytoplasmic transport
SELMODRAFT_446187
03015 mRNA surveillance pathway
SELMODRAFT_446187
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smo03019
]
SELMODRAFT_446187
03041 Spliceosome [BR:
smo03041
]
SELMODRAFT_446187
Enzymes [BR:
smo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SELMODRAFT_446187
Messenger RNA biogenesis [BR:
smo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
SELMODRAFT_446187
Spliceosome [BR:
smo03041
]
Complex C
Other components
EJC/TREX
SELMODRAFT_446187
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
SELMODRAFT_446187
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
9649288
NCBI-ProteinID:
XP_002985161
JGI:
446187
UniProt:
D8SPE8
LinkDB
All DBs
Position
Unknown
AA seq
473 aa
AA seq
DB search
MGEAKENDTYQEELLDYEEEEEAAPDAVAAKGAAETVKKGYVGIHSSGFRDFLLKPELVR
AIVDCGFEHPSEVQFECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPLKGQVAALV
LCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKTHKDLLKNECPHIVVGTPGRILQ
LTREKELSLKGVRHFILDECDKMLESLDMRRDVQEIFKLTPHDKQVMMFSATLSKEIRPV
CKRFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEAEKNRKLNDLLDALDFNQVVIFVKSVN
RAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNI
VINYDMPESADTYLHRVGRAGRFGTKGLAITFVASSTDSNVLNQVQERFEVDIKELPEQI
DTSTYSKQFFIARSSQGLILCVVCSSQCRLSFKEELKRRIYFLRTSISKAVQC
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
atgggtgaagccaaggagaacgacacttatcaggaggagcttttggactacgaggaggaa
gaagaagcggcccccgacgccgttgcagctaagggagcggcagaaacagtgaaaaagggc
tatgttggtattcacagctccggttttcgagactttctactcaagcctgaactcgttcgt
gctatcgttgattgcggttttgagcatccatcagaagtgcaattcgagtgcatcccgcaa
gctatactcggaatggatgtcatctgccaagcgaagtccggaatgggaaaaactgccgtg
ttcgtgctttcaacgctgcagcagatcgagccacttaaggggcaagttgctgctctggtc
ttatgtcacacgcgagagctagcttaccagatttgccacgagttcgaacgattcagcact
tatcttccagacatcaaggttgcggttttctatggtggtgtcaacatcaagacccacaag
gacctcctcaaaaacgaatgcccccacatcgtcgtcggcacaccagggcgtattcttcag
ctgacgagggagaaggaactgagcctgaagggtgtgaggcacttcatccttgatgagtgt
gacaagatgctggagtccctcgacatgaggcgcgacgtgcaggagatcttcaagctgaca
ccccacgacaagcaagtgatgatgttctcagccaccctcagcaaggaaattcgcccggtt
tgcaagcggttcatgcaagatcctatggagatctatgttgacgacgaagccaagctgact
ttgcacggactggtgcagcactatatcaaactaagtgaagctgagaaaaacaggaagctg
aacgatcttctggacgctttggacttcaaccaggtggtgatcttcgtcaagagcgtgaac
cgtgcggcggagctgaacaagttgctggtggagtgcaatttcccttctatctgtatccac
tcggggatgtcacaagaggaaaggttgacgaggtacaagggattcaaggaagggcacaag
cgaattcttgtggcgactgacttggtggggaggggcatagatattgagcgcgtgaacatc
gtgatcaactatgatatgccagaatccgcagatacttatttacatagggttggccgagct
ggacgattcggaacaaagggcttggccatcacatttgtagcttcttcgactgactcgaac
gtgctaaatcaagttcaggagagatttgaagtagatattaaggagctgccagagcagatc
gatacctccacctacagtaagcaattcttcatcgctcgaagttctcagggactgatactg
tgtgttgtgtgttcttcacagtgccgtcttagtttcaaggaggaactgaaaagaaggatt
tactttttaaggacttccatttctaaagctgtacaatgttga
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