Selaginella moellendorffii: SELMODRAFT_50132
Help
Entry
SELMODRAFT_50132 CDS
T01496
Name
(RefSeq) hypothetical protein
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
smo
Selaginella moellendorffii
Pathway
smo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SELMODRAFT_50132
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smo03019
]
SELMODRAFT_50132
03012 Translation factors [BR:
smo03012
]
SELMODRAFT_50132
Enzymes [BR:
smo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
SELMODRAFT_50132
Messenger RNA biogenesis [BR:
smo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
SELMODRAFT_50132
Translation factors [BR:
smo03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
SELMODRAFT_50132
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HA2_C
Helicase_C
OB_NTP_bind
DEAD
AAA_19
Ank_2
HA2_N
nSTAND3
Ank_5
AAA_22
ATPase
ABC_tran
AAA_7
AAA_29
Motif
Other DBs
NCBI-GeneID:
9658646
NCBI-ProteinID:
XP_002978696
JGI:
50132
UniProt:
D8S5Z7
LinkDB
All DBs
Position
Unknown
AA seq
908 aa
AA seq
DB search
LSNEPHSMQLTETTQKLPIWKFRDVITTTVDQNKVVIIAGETGCGKSTQVPQYLLDHMWG
QGKSCRVVCTQPRRISATSVADRIATERGEAIGETVGYQIRLESRGGPHSSLMFCTNGVL
LRKLVTAKEAGVSATHIIVDEIHERDCNADFLLIVLKGLLLAQPDLRLVLMSATLDAELF
SSYFNNCPVLKIPGFTHPVTVYYLEDVLSMTNFEANARKRSAEPAADSLLLSEEDADEMD
NALTCAWLDDDFEQLLSLVTENPRPEVVDYQHSSTGITALMVAAGKGRVEDVGVLLSLGS
SCSLVSQEGQTALDMAESNGEEEAAETIREHIKQAAEVQTAEKEAEILGKYHGSVDQEEV
DILLIERLLHTICSDPGDGAVLVFLPGWEDITRCRDQLMASPFYSDETRFLILPLHSMIP
MSDQKKIFTKPPPGARKIVLATNIAESAITIDDVVYVIDSGRMKEKSYDPYTNVSTFQTT
WVSKASARQRQGRAGRCRAGFCYHLFSKVRAASLADFQLPEMKRTPLEEVCLKVKLLQPR
GDVRDFLSSALDPPLDISIQNAMSLLQDIGALTPAGELSELGQQLGSLPVHPATSKMLLL
SILLNCLDPALTIACAAGYRDPFVLPMAPHLKREAFAAKNHLASKYGGYSDHLAVVAAFD
GWEAARKRGQDYSFCSQYSLSPGVMNMLDGMRKQLLRELTLKGFVKRDPRPCSLNAKDPG
IVRAILSACLYPSVARILPPDESGRKVIAQIARGEKVRIHPQSSNFRLLVQQQFPDLNVY
NDHLLVFDEVTRGESQVYIRNNTCVKPHPLLFFCTELSVAPLRSYREEEYEMAGPAEREL
MEAADDTLAMVIDRWLKYQTSSVMAAQVYCLRERLLSALLFKVKNPSANLPDMLAASVHA
LACVFSYE
NT seq
2724 nt
NT seq
+upstream
nt +downstream
nt
ttgtctaacgagcctcactcaatgcagctgacagagacgacgcaaaagcttccgatttgg
aagtttcgagatgttatcacgactactgtggatcaaaacaaggttgtcattatagcgggt
gaaacaggctgcggcaaatcaacacaagtccctcagtacttacttgatcatatgtggggg
caagggaaatcgtgccgggtggtatgtactcaacctcgtcgaatttctgctacttcagtt
gcggatcgtatcgcgactgagcgtggagaggctattggtgaaacggttggctatcagatc
cgactagaaagcagaggtggtcctcatagctccttaatgttttgtaccaatggggtactg
ctccggaagctcgtaacggcgaaagaagctggagtttcagcaacgcatatcattgtggac
gaaattcatgaacgagattgtaatgcggacttcttgcttatcgttctaaaaggattgtta
ttggctcagccagacctccgattggttctcatgagtgccactcttgatgcggaactgttc
tcttcgtattttaacaactgtccggttttgaagataccgggttttactcatccagtgacc
gtgtactacttggaggatgttctctccatgaccaatttcgaggccaatgctagaaagcgc
tctgcggagcctgcggcagatagccttttgctcagcgaggaagatgcagatgagatggac
aacgcgttgacatgtgcttggctagatgatgactttgagcaacttctgagcttggtgacc
gagaatccaagacctgaagtcgtagattaccagcattcgtcgacaggtattacggcctta
atggttgcagctgggaaaggaagggtcgaagacgtcggcgtgcttctatcattgggaagt
agctgctcgcttgtgtcacaagagggacagacagctttagacatggccgaaagtaacggg
gaagaggaggctgcagaaacgataagggaacacatcaaacaggcagcagaagtccaaact
gcagaaaaggaagccgaaattcttgggaagtaccacggctctgtggatcaagaagaagta
gacattcttctgatcgagcgtctactccatactatctgtagtgatcctggggacggagct
gttttagtgtttcttcctggctgggaggatatcacgagatgcagagaccagctgatggcg
tcaccattttacagcgacgaaaccaggttcctcatattacctctgcattcgatgattcct
atgagcgaccaaaagaagatttttacgaagccaccgcccggcgcgagaaagattgtcttg
gcaaccaacattgctgagagcgccatcaccattgacgacgttgtctacgtgattgatagc
gggaggatgaaggagaaaagctatgatccttatacaaacgtctctactttccagacaacg
tgggtttcaaaggcaagtgcacgacaacggcagggacgcgcaggtcgctgccgtgcgggc
ttctgctatcatttgttctccaaagtccgtgctgcatccttagccgactttcaacttcct
gagatgaaacgaactcctctggaagaagtttgtttgaaggtaaagcttctccagccgcgt
ggtgatgtaagggatttcttgtcgagtgctttggatccaccactcgacatatccatccag
aacgctatgtcactactccaagacattggtgcacttacacctgcgggagagcttagtgaa
cttggacaacaacttggctcgttgcctgttcatccagctacgagcaagatgctgttgctg
tcgatactactcaactgcctggatccagcgcttactatcgcctgtgcagccggataccga
gacccttttgtgctacctatggctccgcacctgaagagagaggcttttgctgcaaaaaat
catctggcttcaaagtatgggggatacagtgatcatttagcagtcgttgctgcgttcgac
ggatgggaagcggcgagaaaaaggggtcaggattatagtttctgctcgcagtacagttta
tcaccaggtgttatgaacatgctggacggaatgagaaagcaactactcagagagctgacg
ttgaaggggttcgtcaagagagatccgcggccatgcagcttgaatgcaaaggatccaggc
attgtccgagcaatactctccgcttgcttatatccgtccgtggcaagaattctgccccct
gatgaaagtggtcggaaggttattgctcagatagccaggggcgagaaggttcggatccat
cctcagtcatcgaactttcggctgttggttcagcagcagttcccggatcttaacgtttac
aacgaccaccttcttgtttttgacgaagtcactcgcggagaatctcaggtgtatatcaga
aacaacacttgcgtcaagcctcatccacttctgtttttctgcaccgagctgtccgtggcg
cctcttagatcttaccgagaggaagagtatgagatggctggtcctgccgagagggagctt
atggaggctgcggacgacacactggcaatggtgatagatcgatggctgaagtatcagacg
tcgtcggtcatggcggcacaggtttattgtctgcgcgagcggcttttatcggctttgctc
ttcaaggtgaagaatccgagtgccaacttaccggatatgctcgctgcgtccgtgcatgca
ctcgcctgcgttttctcatacgaa
DBGET
integrated database retrieval system
