Selaginella moellendorffii: SELMODRAFT_51367
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Entry
SELMODRAFT_51367 CDS
T01496
Name
(RefSeq) hypothetical protein
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
smo
Selaginella moellendorffii
Pathway
smo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
smo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
SELMODRAFT_51367
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
smo03041
]
SELMODRAFT_51367
Enzymes [BR:
smo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SELMODRAFT_51367
Spliceosome [BR:
smo03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
SELMODRAFT_51367
Complex B
SELMODRAFT_51367
Complex C
U2 SnRNP specific factors
SELMODRAFT_51367
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
Cas3-like_C_2
SNF2-rel_dom
Queuosine_synth
Motif
Other DBs
NCBI-GeneID:
9657031
NCBI-ProteinID:
XP_002980961
JGI:
51367
UniProt:
D8SC81
LinkDB
All DBs
Position
Unknown
AA seq
653 aa
AA seq
DB search
DLDSIQYEEDRSPSAPAAPAAPEKEKGEDEVDPLDAFMEGIHEEVSRIPTPGSKPSRIQE
EEEEEDDPMETFLKARRDAGLSLAAEALHAGYDSDEEVYAAARAVEKGMVDYDSDDNAII
TADRKKIDPLAPLDHSQLQYAPFDKDFYEEDASISGLSEEDVTSYRQSIGVRTSGFDVPR
PVKQFKELGLDSLLMGAITKQGYENPTPIQCQALPIVLSGRDIIGIAKTGSGKTAAFVLP
MIVHIMDQEELGKGEGPIGVICAPTRELAQQIFNESRKFAKPYGIRVSGVFGGMSKLDQF
KELKAGCEIVVATPGRLIDMLKMKALTMFRATYLVLDEADRMFDLGFEPQIRSIVGQIRP
DRQTLLFSATMPRRVETLAREVLSAPVRVTAGEVGRANEDVTQVAQIVATDADKLQWMLS
KLPQMVDAGDVLVFASTKVRVEELEKHLQDSGFKVAALHGDKDQASRVDVLQGFKSGQFH
VLVATDVAARGLDIKSIKTVVNYDTAKDMDTHVHRVGRTGRAGDKEGVAYTLVTQKEARF
AGDLVNGFVAAGQNVPSELMDLAMKDGRFRAQREGRRKGGKGGGRGKGGGGGGRGVRGVD
YGLGIGYSRDASSNPSAPVHQARKSSGVGAASSSPSSSMMTRFKNSFVAASSS
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
gatctggacagcatccagtacgaggaggatcgatcgccgtcggcgccagcagcgccagca
gcgccagagaaggaaaaaggagaggacgaagtggatcctctcgacgcattcatggagggc
attcacgaggaggtaagtaggatccctacacccggcagcaagccttccaggatccaggaa
gaggaggaggaggaggatgatccgatggagacattcctcaaagctcgccgtgatgctgga
ctctctctggctgccgaggcgcttcacgctggctatgattccgacgaggaggtctatgcc
gctgccagagccgtggagaaaggcatggtggattacgactcggacgacaatgccattatc
actgcggatcgcaagaagatcgacccgctcgcgcctctggatcatagccagctccaatac
gctcctttcgacaaggatttttacgaggaggacgcttcaatctcaggattgagcgaagag
gatgtcacaagctatcgacagtccattggagtaagaacatctggcttcgatgttcctcgg
cccgtaaagcagttcaaagagcttggcttggacagcttacttatgggtgccatcaccaag
cagggttacgagaacccaacacccattcaatgccaggctcttccgatcgttctgtctgga
cgtgacatcatcggcattgccaagactggatcaggcaagactgctgccttcgtcctgccc
atgatcgtgcacatcatggatcaggaggagctgggtaaaggcgagggtcctatcggagtg
atatgtgctcctacgcgagagctggctcagcagatcttcaacgagtcgagaaagtttgcg
aagccttacgggatccgggtgtcaggcgtctttggcggaatgtccaagctcgaccagttc
aaggagctcaaggcaggctgcgaaatagttgtggcaactccgggaaggctcattgatatg
ctcaagatgaaagcgctgacaatgttccgggcaacttatctggtcttggacgaggccgac
aggatgtttgatcttggcttcgagcctcaaatcaggtccatcgtgggacagattcgaccc
gaccgccaaactcttctcttttcggcaacaatgcctcggagagtcgagactctggcacgg
gaagttctctcggctcccgtgcgtgtgactgctggagaagtcggcagagccaacgaggac
gtcacacaagtagctcaaatcgtcgcaaccgacgcagacaaactccagtggatgctcagc
aagcttccgcagatggtggatgcgggggacgtgctcgtgtttgcttcaaccaaagtgagg
gtggaagagctggaaaaacacctccaggacagcggtttcaaggttgcggcgttacacggg
gacaaagatcaagcgtcacgggtggacgttctccagggattcaagtctggtcagtttcac
gttctagttgcaacagacgtggctgcgcgggggctggacatcaagtctatcaaaaccgtg
gtgaactacgacactgcaaaggacatggacactcatgtccatcgggttgggcgcacaggc
cgtgctggtgacaaggagggagttgcctacactttggtgacgcagaaagaggctcgtttt
gccggagacctcgtgaacggcttcgttgccgccgggcaaaacgttccaagcgagcttatg
gacttggcaatgaaggatggacgcttcagggcccaacgggaagggcggaggaaaggtggc
aaaggtgggggacggggaaaaggaggtggtggtggaggtcgtggagttcgtggtgttgat
tacggcctgggaattggctacagccgggatgcctcgagcaatccttctgcgcctgtccat
caggctagaaagtcgtctggagtgggagcagcgagctcaagcccatcatcgtcaatgatg
acacgcttcaagaacagcttcgttgctgcgtcatcgagt
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integrated database retrieval system
