Selaginella moellendorffii: SELMODRAFT_75384
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Entry
SELMODRAFT_75384 CDS
T01496
Name
(RefSeq) hypothetical protein
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
smo
Selaginella moellendorffii
Pathway
smo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
smo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
SELMODRAFT_75384
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
smo03041
]
SELMODRAFT_75384
03009 Ribosome biogenesis [BR:
smo03009
]
SELMODRAFT_75384
Enzymes [BR:
smo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SELMODRAFT_75384
Spliceosome [BR:
smo03041
]
Complex A
U1 snRNP components
U1 related factors
SELMODRAFT_75384
Complex B
SELMODRAFT_75384
Ribosome biogenesis [BR:
smo03009
]
Eukaryotic type
Pre-60S particles
Helicases
SELMODRAFT_75384
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
SNF2-rel_dom
OapA_N
Motif
Other DBs
NCBI-GeneID:
9641449
NCBI-ProteinID:
XP_002960303
JGI:
75384
UniProt:
D8QQR1
LinkDB
All DBs
Position
Unknown
AA seq
575 aa
AA seq
DB search
MPYIPPHLRSGASSNSRAATPASPSPSQRSSSGDFGSRDRDYGGSFGSYSRNRPDANGFA
SGNGYGREKWPFPSRDTRGLPPPEAVWSRWQPSERVRRMQSDQIADVRARLNVDVEITDG
TPAAQAPVETFEDMCLHANIMKDIAFHEYTNPTPIQAQAMPVALSGRDLLGCAETGSGKT
AAFAIPMIQHCLAQPPIRHGDGPLALVLAPTRELAQQIEKEVRAFSRSTDGFKTAIVVGG
THIGEQRSELRSGVQVVVATPGRFIDHLQQGNSSLLRVSYVVLDEADRMLDMGFLPQIKE
VMQNLPKKHQTLLFSATMPEEIEALAQEYLTKPVQVKVGKVSSPTSNVLQSLEKVDEKDK
IDYLLAMLVESSNQSERAGQPPPLTIVFVERKARCDDVADALLAQGLKAAALHGGRTQGE
REAALRDFRKGAISILVATDVASRGLDVTGVAHVVNLDLPKVMEDYVHRIGRTGRAGASG
RATSLYTDRDAFLVAQIRKAIAEAEAGNVMAFATGKAARRKEREEAAAFKEGRLTGTSGV
GTFGSTTVRVDDKYKHMLVASVDPKKGVADDAWDD
NT seq
1728 nt
NT seq
+upstream
nt +downstream
nt
atgccatatattcctccacatctgaggtcgggagcctcgtccaattcaagagccgccacg
cccgcgtcgccatcgccgtcgcagcgatcgtcctctggggattttgggagcagggatcgg
gattatgggggcagctttgggagctacagcaggaatcggcccgacgcgaatggattcgcg
tcggggaatggctacggccgcgagaaatggcccttcccgagccgcgatacccgcggcttg
ccgccgccggaggcggtgtggtcacggtggcagccatcggagcgcgtgaggagaatgcag
agcgatcagatcgcggatgtgagggcgcgtctcaatgtcgatgtggaaatcactgacggc
acgccggctgcccaggcgccggtggaaacgttcgaggacatgtgtttacatgcgaatatc
atgaaagacattgcgttccacgagtacactaatccaactccaatccaagcgcaggctatg
cctgtggctctttctggaagagacttgctcggatgtgctgagactggaagtggcaaaact
gctgcttttgctatcccgatgatccagcattgtctagctcaacctcctattcgtcatggt
gatgggcctttggccttggtgctcgcaccgactcgtgagcttgcccaacagatcgagaaa
gaggtgagggcattcagccgatccacagatggcttcaagactgctatagttgtgggtgga
actcatatcggagagcagagatccgagctgcgatctggagttcaagtggttgtagctaca
cctggccgttttatcgaccatcttcagcaaggaaatagttctttgttgagagtatcgtat
gttgtactggacgaagccgacagaatgcttgacatgggttttttaccccagattaaggag
gtgatgcaaaatcttcctaaaaagcatcagacgctccttttcagtgctacgatgccggag
gagattgaagctcttgctcaggagtatctgacaaaacctgttcaggttaaagttgggaaa
gtgagcagtccaacctcaaatgttctacagtctctcgagaaagttgatgagaaagacaag
attgactaccttctcgcgatgcttgtggagtcgtcaaatcaatctgaacgagcagggcag
cctccgcctcttacgattgttttcgtggaaagaaaggcaaggtgtgacgatgttgcggat
gctctgttagctcagggactcaaagcagctgcccttcacggtggaagaactcagggcgaa
agagaagctgcattgagagattttcgaaagggtgcaatcagtatcctggtcgcaactgat
gtcgcctcgcgtggtcttgatgttaccggagttgcacatgttgtgaacttggatcttcca
aaggttatggaagattacgtccaccgcattggaaggacagggcgagctggtgcaagcggt
cgagcgacatctttgtacaccgatcgagatgcttttctggtcgcacagattcggaaagca
atagcagaggcagaggctggaaatgttatggcttttgcaactggaaaggccgcacgaagg
aaagagagagaggaagctgccgctttcaaggaaggccggctaacagggacctccggcgtc
ggtacgtttggctctaccactgtccgggtagatgacaagtacaagcatatgctggtagct
tcggttgatccgaagaaaggcgttgcggatgatgcctgggatgattaa
DBGET
integrated database retrieval system
