Selaginella moellendorffii: SELMODRAFT_76120
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Entry
SELMODRAFT_76120 CDS
T01496
Name
(RefSeq) hypothetical protein
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
smo
Selaginella moellendorffii
Pathway
smo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
smo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
SELMODRAFT_76120
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
smo03041
]
SELMODRAFT_76120
Enzymes [BR:
smo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
SELMODRAFT_76120
Spliceosome [BR:
smo03041
]
Complex C
Other components
Step II factors
SELMODRAFT_76120
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
AAA_19
AAA_16
AAA_30
SLFN-g3_helicase
Flavi_DEAD
Cas3-like_C_2
cobW
nSTAND3
ABC_tran
PhoH
SRP54
NPHP3_N
T2SSE
NACHT
AAA_29
DUF7168
Herpes_ori_bp
AAA_23
Motif
Other DBs
NCBI-GeneID:
9657903
NCBI-ProteinID:
XP_002962098
JGI:
76120
UniProt:
D8QS09
LinkDB
All DBs
Position
Unknown
AA seq
698 aa
AA seq
DB search
MAELPIRRESECIVSAVRDNSVTVVIGETGSGKTTQLSQILHDAGFTADGKCIAITQPRR
VAAVSVARRVAHEMGVTLGEEVGYAIRFENRTSSRTFIKYLTDGCLLREFLVDIELSQYS
VVILDEAHERTLNTDILLGLLKRLVALRKPELKLIVTSATLDGHKISKFFGGCPVVNIPG
KLFPVEIMYSTEQPVSYVESAVETAIEIHAKEPPGDILVFMTGQEEIEKVIAKLEHRVQT
LEEGSCMDALVLPLHASLPPEFQARVFTPAPSNCRRIIVATNVAETSLTVDGVVYVIDPG
FVKQRQYNPTTGMDALCVVQISRVQATQRAGRAGRTCPGKCYRLYSSSNFEQDFPAVTVP
EIQRSSLAGALLHLKSLEIPNLDVLNFEYLDAPSVASLEDALRQLYLIDAITSKGDVTSL
GKRMAGLPLEPSLARALIAAEDLGCLEDALVLAAMLSCDSVFYQAPKKEKKEQSAVHQDL
PTGDGFGDHIQLLQIYEKWRRVDYDFEWCKEHGLQIRAMKFARDIRKQLSLIMQGKSDFR
KRKDPAYKNLRKAFAEGFANRLAHRLPNHNGYRTLAQSSHLVQVHPSACKMEIDADGLLP
EWILYHELLTTTRPYIKKICVIEGRWAQPTLVKLQDLDVISLSGRLPEESRTHLDESSET
KPASAVTQPANKEAVDAARERYMARKKARTNPARLSAR
NT seq
2097 nt
NT seq
+upstream
nt +downstream
nt
atggcggagctcccgatccggcgcgaatcggagtgcatcgtgagcgctgtgcgcgacaac
agcgtcacggtcgtgatcggcgagacgggatccggtaagacgacgcagctttcgcaaatc
ctccacgatgcagggttcacagccgacggcaaatgcatcgccatcacgcagccccggcgc
gtggcggccgtgtccgtcgctcggcgcgtcgctcacgagatgggagtgacgctgggcgag
gaagtgggatacgccattcgcttcgagaacaggacgtcgagcaggaccttcatcaagtat
ctcacggacggctgccttctccgggaattcctagtcgacatcgagctcagccagtactcg
gtggtgatcttggacgaagcccacgagagaacactcaacaccgacatccttctcggcttg
ctcaagcgcctggttgccttgagaaagcccgagctcaagctgatcgttacctcggcgact
ctagatggtcacaagatctccaagttcttcggtggctgccccgttgtcaacatccctggg
aagctcttcccggtggagatcatgtatagcaccgagcagccagtgagctacgtggagtcg
gcggtggagaccgcgatagagatccacgccaaggagcctccgggtgatatcctcgtgttc
atgacgggccaggaggagatagagaaggtgatcgccaagctggagcacagggtccagact
ctggaagaaggctcgtgtatggacgcgcttgttcttcctctccatgcttcgcttccaccg
gagtttcaggcccgggttttcaccccggctcctagcaactgccggaggatcatcgttgct
acaaatgtcgcggagacgtctctcacggttgacggtgttgtctacgtgattgatccaggc
ttcgtgaagcagagacagtataatccgaccacgggcatggacgctttgtgcgtcgttcag
ataagcagggttcaagcaacgcagcgagctggtcgagcaggacggacgtgtcctggtaaa
tgttacaggctctactcgagctccaacttcgagcaagactttccggccgtgacggtaccg
gagattcagaggtcgtcgctagctggggcgctcctccatctcaagtcgctggagattcca
aacctcgacgtgctgaacttcgagtacctggatgccccgtcggtggcatcgttggaggat
gctttgaggcagctatatctcattgacgcaatcaccagcaaaggcgacgttaccagcctt
ggcaagcggatggctgggcttccgctggaaccgtctctagcgagagctttgattgctgcg
gaggatctcggatgcctggaagacgctctagtactggctgcgatgctctcttgcgactcg
gtgttttaccaagctccaaagaaggagaagaaagaacaatcagctgttcaccaggacttg
ccaacaggagacggttttggcgatcacattcagctgctacagatctatgagaagtggaga
agggtggattacgacttcgagtggtgcaaagagcacggtttgcagataagagcgatgaag
ttcgcgagggacatacggaagcagctcagcctgatcatgcaagggaaaagtgacttcagg
aagcggaaagatccagcgtacaagaacttacgcaaggcttttgccgaaggctttgcgaac
aggcttgctcatcggctgcccaatcacaacgggtaccgcactctggcacaaagctctcac
ctcgtgcaagttcatccttcagcttgcaagatggaaattgatgcggacggactgctaccc
gagtggattctttaccacgagttgctaacaacgacacggccgtatatcaagaagatttgc
gtcattgaaggtcgctgggctcaaccgacgctggtgaagcttcaagacctggacgtcata
agcttgagtggcaggctgccagaagagtcaaggacgcatttggacgaatcgtcggagact
aagcccgcaagtgccgtcactcaaccagctaacaaagaagcggtggacgctgctcgagaa
cgatatatggctcgcaaaaaggccaggaccaatccggcacggctttcagcccgctga
DBGET
integrated database retrieval system
