Selaginella moellendorffii: SELMODRAFT_77425
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Entry
SELMODRAFT_77425 CDS
T01496
Name
(RefSeq) hypothetical protein
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
smo
Selaginella moellendorffii
Pathway
smo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SELMODRAFT_77425
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smo03019
]
SELMODRAFT_77425
03016 Transfer RNA biogenesis [BR:
smo03016
]
SELMODRAFT_77425
Enzymes [BR:
smo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
SELMODRAFT_77425
Messenger RNA biogenesis [BR:
smo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
SELMODRAFT_77425
Transfer RNA biogenesis [BR:
smo03016
]
Prokaryotic type
tRNA degradation factors
SELMODRAFT_77425
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
KH_1
PNPase
Motif
Other DBs
NCBI-GeneID:
9656549
NCBI-ProteinID:
XP_002961851
JGI:
77425
UniProt:
D8QTG9
LinkDB
All DBs
Position
Unknown
AA seq
808 aa
AA seq
DB search
MVVLDSESTTSISSGDPEAGPKKVSIKKARATKENLVVVDSDSTTSFAEPALQPELGDFC
IGPCRQQHSVRIPVGDRQIVLETGSIGRQAGGAVTISDGETILYTTVCTSAEASEPSDFV
PLYVHYHERYSAAGRTSGGFNKREGKPRDSEVFISRLVDRPLRPMIPKGYFHEIQVLSWV
LSYDGSHLPEPLAITAAGAALALSDVPVLKPVAGVRVGYINGKYVLNPTASEVTKSSLDM
IMAGTSDGLLMIEGYCNLLSEDELVKAVETGQRAVKIICKELEEFGEKFGRKKRILKAPF
STSGLEERIKEIVGDDLYLALHIRGKQPRAAVITALEKKVWSKLTEEGVALSKTREQLEY
AHVWDEDEIKDGEIDQGDVHITPTPRTSFTKLFDAATVKLAFKEYTSKTLKSIIAKEKVR
SDGRGISDVRPISCSCNLLPRAHGSAIFTRGETQALVAVILGGDNMAQRIDGVTDADEVK
RFYVQYVFPHSCVGEVGRIGPASRREIGHGRLIERSLEPIFPSKFPYTVRVESTITESNG
SSSMASVCGAYLALCDAGVPVKCPIAGVAMGLILDPKEYGGSGGPVILTDILGSEDACGD
MDLKVAGSKEGITAFQMDLKVQGINLSILKRALSKAKTARCHILKEMTMCSPPPSTKLSK
HVDLIDFVKVGREKVNMVVGTGGKTVRQIIDDSGVESVDVSSDGSIRIVGKDRDKVDKAM
EKIRSITTDPTVGTVYRNCPVKSLTSFGCFLEISPGREGLCHISELTTNRLSRPEEFVAV
GERLDVKVIEVTKMAFFLFPLSAGSLKT
NT seq
2427 nt
NT seq
+upstream
nt +downstream
nt
atggtcgtgttagacagtgagagtaccacgtccatttcttctggggatccagaggctggc
ccgaagaaggtttccatcaagaaagctcgcgctacaaaggagaatttggtcgtggtggac
agcgatagtaccacctcttttgcagagccagcgctgcagccagagttgggtgatttttgc
attggtccttgccggcagcagcattccgttcggattccagttggtgatcgacagattgtt
ctcgaaacgggttcgataggtaggcaagctggtggtgctgttacaatcagcgatggagaa
actatcctgtacacgactgtttgtacttctgctgaggcgagcgagccatctgattttgtt
ccgctgtacgtgcattatcacgagcgctactctgctgctggtcgcacaagtggtggattt
aacaagagagaagggaagccacgagacagcgaggtttttatatccagacttgtggatcgg
cctttaagaccgatgataccgaaagggtattttcatgagatacaagtgctttcttgggtt
ttgagctatgatggttcgcatttgcctgaaccgctggctattactgctgcaggcgccgct
ctggcactttcagatgttcctgttttgaagcctgtggctggagtaagagtcggttacatc
aatgggaaatatgttctcaacccgacagctagcgaggttacgaaatcaagccttgatatg
ataatggcagggacaagcgatggtctgctcatgatcgagggatattgcaacttacttagc
gaggatgaattggtgaaagcagtagaaacaggccagcgtgcagtgaagataatttgcaag
gagctggaggagtttggagagaagtttggaaggaaaaaacgcattctgaaggcaccgttt
tccacttccggtctagaggaacgaatcaaggaaatcgtgggagatgacctttacctggct
cttcatatacgcggcaagcagcctcgcgctgcagtgataactgctttggaaaagaaagta
tggtcaaaactgaccgaggaaggcgtggcattatccaagactagagagcagcttgagtat
gcgcacgtatgggatgaggatgagattaaagatggcgaaattgaccaaggcgatgtccat
ataacgcctactccgagaaccagtttcacaaagctttttgatgctgccactgttaagctt
gccttcaaagagtacacttctaagaccttgaaatcaataattgccaaggagaaagtgcgt
agtgacggccgtggaatatcagatgttcggcccatcagttgttcgtgtaatctgcttcct
cgagctcatggtagtgcgatttttactcgtggagaaacgcaggctttagtagctgttata
ctgggtggtgataatatggcgcaacgcattgacggtgtcactgatgctgatgaagtgaaa
cgcttctacgtgcagtacgttttccctcactcctgcgtcggggaagttggtcgcatcggc
cctgctagcagacgagaaattggtcatggaaggcttatcgagaggtcccttgagcctata
tttccgagcaaatttccatacacagtccgcgttgagagtaccatcaccgaaagcaatggc
tcctcaagcatggcatctgtgtgtggagcttatcttgctttgtgtgacgctggggttcca
gtcaagtgtccgattgccggtgttgcaatgggccttattttggatccaaaagaatacggt
ggtagcggcggacccgtaatactgacggacattcttggctccgaggacgcctgtggcgat
atggacttgaaggtcgcaggtagcaaggaaggcatcactgcgtttcagatggacctcaag
gtccaaggaatcaacttgtcaatcctgaagcgagccctttcaaaggctaaaactgcaaga
tgtcatattctcaaggaaatgacaatgtgctctcctccgccatcgacgaagctttctaag
catgtcgacctcattgactttgtaaaggttggtcgcgagaaagtaaacatggttgtagga
accggcggtaaaactgtgaggcaaattatcgacgactcgggcgtagaatcagtagatgtc
agcagtgacggctcgatccgcatagttggaaaagaccgagacaaggttgacaaagcaatg
gagaaaattcgtagtattacgaccgatcctactgtaggaacagtatataggaattgcccc
gtgaaatctttgacatcgtttgggtgtttcttggagattagtcctggtcgagagggactt
tgtcacataagtgagctaactacaaacagattgtcaaggccagaggaattcgtggctgtg
ggtgagcgcttggatgtcaaagtgatcgaggtaacaaagatggcattttttctctttccc
ctctcggctggttctctaaaaacataa
DBGET
integrated database retrieval system
