Selaginella moellendorffii: SELMODRAFT_78691
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Entry
SELMODRAFT_78691 CDS
T01496
Name
(RefSeq) hypothetical protein
KO
K14554
U3 small nucleolar RNA-associated protein 21
Organism
smo
Selaginella moellendorffii
Pathway
smo03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
smo00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
SELMODRAFT_78691
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
smo03009
]
SELMODRAFT_78691
Ribosome biogenesis [BR:
smo03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
SELMODRAFT_78691
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Utp21
WD40_Prp19
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_EML
WDR55
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
EIF3I
Beta-prop_TEP1_2nd
ANAPC4_WD40
Beta-prop_TEP1_C
Beta-prop_RIG_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_WDR75_1st
WDR90_beta-prop_4th
WD40_MABP1-WDR62_1st
Beta-prop_IFT122_1st
Beta-prop_DCAF4
Beta-prop_HPS5
Beta-prop_VPS8
Beta-prop_IFT140_1st
Beta-prop_WDR19_1st
NBCH_WD40
Beta-prop_SCAP
Beta-prop_Vps41
Beta-prop_SPT8
WD40_RFWD3
Beta-prop_EIPR1
VID27
Cytochrom_D1
VPS8_N
Motif
Other DBs
NCBI-GeneID:
9660762
NCBI-ProteinID:
XP_002962822
JGI:
78691
UniProt:
D8QUF4
LinkDB
All DBs
Position
Unknown
AA seq
900 aa
AA seq
DB search
MGIFEAFRAIGYISDGVPFAVQRSGVETLVTVSVGKAWQRFNCSKLLLVFVGPQLEKSIR
ALACYEGFTFAASGNNVVVFDRAHQIAVWKAHSSKIKYLLEFGHFILSSDTEGHVCVWDT
GILSTKEDGKPIAELHLGRGVTCLMHPQTYLDKVLFGFEDGRLQLWNIKSRKMVHEFKGW
NSPVLTCVSSPALDVVGIGCGDGKIHVHNIRYDETIATFTHTTRGGVTALSFRTDGHAFL
AAGGSSGAISIWDLEKKKLQTVINDAHDSEVASLHFLANEPVLMSNSKDNSLKMWIFDSL
DGDARLLRYRSGHSAPPTCIRYYGEGRCILSGGQDRAFRLFSTIQDQQSRELSQGNVTKR
AKRLKLKEEEIKLAPIVAFDAAEIRERDWCNVVTCHLDDCSAYTWRLQNFVIGEHVLKPC
PEKPSPVKVCSISACGNFVTLGTASGHIERFNLQSGLHRGSYRDGTLADQSAHTGAVHGL
ASDATNACLFSAGYDKLIKVWNFKSLQLKASISPGSPIIKMTYHRGNGLAAVSSDDHVIR
LYDMVAVRLVRVFSGHTDRITDFTFSEDGKWLLSSAMDATVRVWDVVAAKQLDAMRVNAA
ITALSLSPGMDMLATCHVNHKGIYLWGNRYMYSAGDIELGSGNAVKDVALPSSTGSRPEE
GGDSNPEKVSRDNIELPGLEEKSELPSTAQITPELVTLSLLPKNQWQGLVHLDTVKARNK
PIAAPKKPERAPFFLPTLPSLSGVPAFASPDQDSQKTNSFTTLPEAENVSSFGSLEAANF
CFSQGLELLEHMKNLTSSSLDAEIRFLQIVDEDAPEEQIRDIGSLIDFLIKATSLNRDFD
FVQAVMLLVLRIHGESILTYSQLRDKAETLREVQSSTWKRLDELLQKNRCIVSFLSNSAY
NT seq
2703 nt
NT seq
+upstream
nt +downstream
nt
atgggcattttcgaagccttccgggcgatcggctacatcagcgatggcgtcccattcgca
gtgcagcggagcggcgttgagacgctcgtcacggtgagcgtcggcaaggcgtggcagcga
ttcaattgctcgaagctactgctggtttttgtaggtcctcagctggaaaaatccatcaga
gcgttggcttgctatgaaggctttacgtttgcagccagtggaaataatgtagtggttttc
gatcgagcacaccagatcgctgtgtggaaagctcactcgagcaaaattaaatatctactg
gaattcggccacttcatcttgagttccgacactgaaggacacgtttgtgtgtgggacacg
ggtattctttctacgaaggaagacggtaagccgattgcagaactccatcttggtcgtggc
gtgacatgcttgatgcatccacaaacataccttgacaaggtcctttttggtttcgaggat
ggccgattacagctttggaatattaaatccagaaagatggtccatgagttcaaaggatgg
aactctcccgttcttacttgcgtatcgtctccagcgctggacgtcgttggaatcgggtgt
ggagatgggaaaatccatgtgcacaatatccgatacgatgaaactattgccactttcaca
catactaccagagggggtgtgacggcactttcgttcaggacagatggtcacgcgttcttg
gctgccggaggatcatccggtgccataagtatttgggacttggaaaagaagaaactgcag
actgttatcaacgacgctcacgactcagaagtagcgtctttgcattttctagctaacgaa
cctgtattaatgagcaactcaaaggacaattctttgaagatgtggatatttgattcatta
gatggtgatgcaaggcttctgcggtacaggagtggtcacagcgctccacctacgtgcata
aggtactacggtgaagggcgatgcatcttgtccggtggccaagaccgagctttccgctta
ttttcgaccattcaagatcaacagagcagagagctttctcaagggaatgtaaccaagcgc
gctaaaaggctaaagctaaaggaagaagaaataaagctcgcacctatcgtcgcctttgac
gcagccgaaatccgagagcgtgactggtgcaatgtcgtcacatgtcatctggacgattgc
tctgcatatacctggcgtttacagaactttgttattggcgagcatgtcctcaagccttgc
cctgagaagcctagccctgtgaaggtttgcagtatcagtgcttgcggaaattttgtgacg
cttggtactgcgtcaggacacattgagcggtttaacttgcagtcgggacttcaccgtggt
tcataccgcgatggcacgttggctgatcaaagcgcacatacaggagcagtgcatggtctc
gcttcagatgcgacgaacgcgtgccttttcagcgctggctacgataagttaatcaaggtg
tggaacttcaagtccttgcagctaaaagcctctattagtcccggctctccgataataaaa
atgacttaccaccgtgggaacggcctcgctgcggtatcgtcagacgaccacgttataaga
ttgtacgacatggttgcagtgcggctggttcgagttttctcgggccacacagaccggatc
accgatttcactttcagtgaggatgggaaatggctcttgtcctcggctatggatgcaact
gtaagagtatgggatgtggttgcagcaaagcaactggacgcaatgcgtgtaaatgctgca
atcacggccctctctctatcaccaggcatggacatgttggctacatgtcacgtaaatcac
aaaggcatatatctttggggtaatcgctacatgtactctgctggagatattgaacttgga
agcggaaatgccgtaaaagatgtcgcgctcccatcgtcgaccggatctcggccagaagaa
ggcggggacagtaatccagaaaaagtttctcgggataatattgagttgcctggcctagaa
gagaagtccgagctccccagcactgctcaaatcactccagagctggtaaccttatcgcta
cttccgaaaaaccagtggcaaggtcttgtgcatcttgatacagtcaaggctcgcaacaaa
ccgatagcagcgcctaaaaaaccggagagagctccgtttttcttgccaacgcttccttct
ctctctggtgtccctgcgttcgcttctccagaccaagactcgcagaaaaccaactcgttc
acgactttgccagaagcggagaatgtaagctcttttggttctttagaagcagctaacttt
tgtttttctcaaggtctggagcttttggagcacatgaaaaacttgacatcgtcatctctc
gacgccgaaattcgcttcttgcaaatagtagacgaggatgctcccgaggaacagatccgg
gatatcggttcgctcatcgactttctcatcaaagctacgtctctaaacagagatttcgac
tttgtccaggcagtaatgctactcgtgcttcgaatccacggcgagagcattctcacttac
tcgcagctgcgagacaaagcagagacgctgcgtgaagtgcaaagctcgacatggaagaga
ctagacgagctcctccagaaaaacaggtgcattgtaagttttctcagtaactccgcctac
taa
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