Selaginella moellendorffii: SELMODRAFT_79566
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Entry
SELMODRAFT_79566 CDS
T01496
Name
(RefSeq) hypothetical protein
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
smo
Selaginella moellendorffii
Pathway
smo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
smo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
SELMODRAFT_79566
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smo03019
]
SELMODRAFT_79566
03041 Spliceosome [BR:
smo03041
]
SELMODRAFT_79566
Messenger RNA biogenesis [BR:
smo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
SELMODRAFT_79566
Spliceosome [BR:
smo03041
]
Complex B
Other components
Prp19-related factors
SELMODRAFT_79566
Complex C
SELMODRAFT_79566
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
Mad3_BUB1_I
TPR_19
TPR_15
TPR_2
TPR_16
ARM_TT21
TPR_8
COP9_hel_rpt
T7SS_EccA1_N
Motif
Other DBs
NCBI-GeneID:
9655226
NCBI-ProteinID:
XP_002963697
JGI:
79566
UniProt:
D8QY84
LinkDB
All DBs
Position
Unknown
AA seq
745 aa
AA seq
DB search
MNPDLLPTDEELVYEEEILRNSYSMRLWWRYIQARFDVPFRKRIILYERALKFLPGSYKL
WHSYLLERMEAVRGLPPGHASFESVNNTFERALVTMHKMPRIWLLYLQSLVEQRYVTKAR
RTFDRALFSLPVTQHERIWELYLRFVRQPGVPSETGFRVHRRFLKFEPSHMEDFIEFLMD
SGKWQEAAERLAEVLNDQSFQSVKSKTRHQLWLELCDLLTKHAHEVSGLQVDAIIRGGIR
NFTDEVGRLWTSLADYYARLSLFEKVRDVYEEGMTTVTTVRDFSLIFDAYSKFEESLLSA
KMSRMGEEDEEKILAQWKKGNLKDFWVFDENDVDLLLARFSYLIERRPELLSSVVLRQNP
HNVHEWHKRASLFKDNPARQVRTYTEAVMTVDPFKAVGKYHSLWTAYAHLYESQNDLKNA
RVVFEKAVQKIYRTVDDLASLYCAWAEMEMKHKNYKTARDILKKATMEPSFATKKLMQGD
RDLPVQMKLYKSLKLWSTYVDLEESLGTLESTRKVYDQILVHKIATPQIIINYAAMLEEN
KYFEDAFGVYEKGVQVFKYPHARDIWTTYLTKFVQRYGGKKLERARDLFEQAVEKVTPED
AKPVYLQYAKLEEDFGLAQRAMKIYDRATKAVPDGEKLSVYDIYIARAAEIYGVPKTRDI
YEVKIPIQSGLPDKDAKLMCLKFAELERTLGEIDRARAIYIYASQMADPRSDTEVWSKWH
DFEVTHGNHDTFKEMLRIKRSVHAS
NT seq
2235 nt
NT seq
+upstream
nt +downstream
nt
atgaatccggacctcctccccacggacgaggagctggtgtacgaggaggagatcctccgg
aattcctactccatgcgcctctggtggcgctacattcaagccaggtttgatgtccccttc
cgcaagaggatcatcctctacgagcgcgcgctcaagttcctccccgggagctacaagctg
tggcattcctacctcctggagcgcatggaggccgtgcgcggcctcccgccgggccacgcg
agcttcgaatccgtcaacaacactttcgagcgcgcgctcgtcacaatgcacaagatgccc
aggatttggctgctctacctccagtccctggtcgagcagaggtatgtcaccaaggccagg
aggacgttcgaccgggcgctcttctcgctgcccgtgacgcagcacgagaggatctgggag
ctctatctcaggttcgtgaggcaacccggcgtgcccagcgagacgggatttagagttcat
cggcggttcctcaagtttgagccgtcacacatggaggacttcatcgagttcttgatggat
tccggcaagtggcaagaggccgccgagcgcctggccgaggttctcaacgatcagagcttc
cagtccgtcaagtccaagacgcggcaccagctatggcttgagctttgcgatttgctcacc
aagcatgcacacgaggtgtcggggctccaggtggatgcgatcatccggggtgggatccgg
aactttacggacgaggtcgggcgcttgtggacttccttggcggattactacgcgcggttg
tcgctgttcgagaaagtcagggatgtgtacgaggaggggatgacgacggtcaccacggtc
agggactttagcctcatcttcgatgcgtactccaagtttgaggagagtttgctctctgcc
aagatgagccggatgggagaggaggatgaggagaagattctagcgcagtggaagaagggt
aatctcaaggatttctgggtgtttgatgagaacgacgtcgacttgctcctggcgaggttt
tcgtacttgatcgagcggaggcccgagcttcttagcagcgtggtgctcaggcaaaatccc
cacaatgtccatgagtggcacaagcgagcgagtcttttcaaggacaatcctgctcgccaa
gtcagaacttatactgaggcggtgatgactgtggaccccttcaaagctgtcgggaagtat
cactccctgtggacagcttacgcgcacctatacgagtcgcagaacgacttgaagaacgct
cgggtggtgtttgagaaagcagttcagaagatttacaggacagtggacgacctcgcgagc
ctgtactgcgcctgggccgagatggagatgaagcacaaaaactacaaaactgctcgagac
atcctcaagaaggcgacaatggagccgtctttcgcgacgaagaagctgatgcaaggggac
cgtgatcttcccgttcagatgaagctttacaagtcactcaagctgtggtcgacttacgtg
gatttggaagagagcctgggtactctcgagtctactcgaaaggtctacgatcagattctg
gtgcacaagatagctacgccgcagattatcatcaactatgcggcgatgctggaggagaac
aagtactttgaggacgcgtttggggtgtacgagaaaggtgtccaggttttcaagtatcct
catgcacgggatatctggacaacgtatctcacgaagtttgtccaacgctacggtgggaag
aagctggaaagagcaagggacttgtttgagcaggccgtcgagaaggttactccggaggat
gcgaaaccagtttatctacaatatgcaaagcttgaagaagactttggactagcgcaacgc
gcgatgaaaatctacgatcgggcgactaaggcagttcccgatggtgaaaagctgagcgtc
tatgacatctacattgccagagcagctgagatatatggcgttcctaagacacgggatatc
tacgaggtaaaaattcctattcaatccggtcttccagacaaagacgcgaagcttatgtgt
ctgaagtttgcagagctggagaggacgttgggagagatcgatcgggctcgtgctatttac
atctacgcgtcgcaaatggcagatccacggtcagataccgaggtctggtcgaaatggcat
gacttcgaggttacgcatggaaaccacgatactttcaaggagatgctccggatcaaacgt
agcgtgcatgccagc
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integrated database retrieval system
