Selaginella moellendorffii: SELMODRAFT_79650
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Entry
SELMODRAFT_79650 CDS
T01496
Name
(RefSeq) hypothetical protein
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
smo
Selaginella moellendorffii
Pathway
smo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SELMODRAFT_79650
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smo03019
]
SELMODRAFT_79650
03041 Spliceosome [BR:
smo03041
]
SELMODRAFT_79650
03009 Ribosome biogenesis [BR:
smo03009
]
SELMODRAFT_79650
03016 Transfer RNA biogenesis [BR:
smo03016
]
SELMODRAFT_79650
Enzymes [BR:
smo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
SELMODRAFT_79650
Messenger RNA biogenesis [BR:
smo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
SELMODRAFT_79650
Spliceosome [BR:
smo03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
SELMODRAFT_79650
Complex C
U4/U6.U5 tri-SnRNP related factors
SELMODRAFT_79650
Ribosome biogenesis [BR:
smo03009
]
Eukaryotic type
Pre-60S particles
Helicases
SELMODRAFT_79650
Transfer RNA biogenesis [BR:
smo03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
SELMODRAFT_79650
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
nSTAND3
APG6_N
Motif
Other DBs
NCBI-GeneID:
9643368
NCBI-ProteinID:
XP_002963518
JGI:
79650
UniProt:
D8QXC9
LinkDB
All DBs
Position
Unknown
AA seq
970 aa
AA seq
DB search
MLGRSCVHEVAVPTGFIAQLDEAVHGSIGEPVFMGDRAKSYPFELDPFQQISIACLERKE
SLLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELSHEFSDVGLMTGD
VSLSPNATCIVMTTEILRGMLYRGSEVLREVAWVVFDEIHYMRDRERGVVWEESIILLPP
AIKMVFLSATMSNATEFAQWICHLHKQPCHVVYTDFRPTPLQHYAFAMGGSGLYLMVDDK
GHFRDDNFAKLQQSSRNAGPDDSLAPPGRRRGGGGRRGGGRGGAKASAGVSTDIYKIVKM
IMERSMQPVIVFSFSRRECEQYALSVSKLDFNSDQEKMDVEHVFSNAIQCLSEEDRSLPP
IHQLLPLLKRGVAFHHSGLLPILKEIVEILFQEGLVKALFATETFAMGLNMPAKTVVFTA
LRKWDGDAHRYMSSGEYIQMSGRAGRRGKDERGICIIMIDDQMDVSTCREMILGKPAPLV
STFRLSYYSLLNLMSRAEGHFDMEYVMKHSFHQFQHEKNVPEMENRINKLEQEAALLDAA
GEETVAEYHRLRLKLAELERQLMSEIIRPDRIIVFLQPGRLVKVRDGADDWGWGVVINVV
KKPTPGGPLPSTIVAAPRAASYLVDTLLLCAPGMELDGSRLKPRPCSPGQKGEMHVVPVQ
MTLLCAISTLRVAVPTDLRPADARLSVLMAMQELERRFPDGLPRLDPVEDMQIDDPELVS
IVKQIDEEEKKLVVHPLHKSEKEASHYSAFQKKAELLTEAQRLRSRLRDSQLHKFREELR
NRTRVLKRLGHINELSVVQLKGRAACLIDTADELLVAELIFEGLFNDLDHHQIVALSSCF
LPIEKSNEQIHLKAELAWPFRRLQDTARMIAEVERECKLETEVEHYVEKFQPYLMDVIYS
WSKGSSFAEICEMTDIFEGSIIRVARRLEEFLNQLRLVFQAIGNGELEKKFEAGIESIRR
GIMFANSLYL
NT seq
2913 nt
NT seq
+upstream
nt +downstream
nt
atgctcgggcgcagctgcgtccacgaggtggcggtgcccacaggctttatagcgcagctg
gatgaggcggtgcacggtagcattggagagccggtgtttatgggcgacagggccaagagc
tacccgttcgagctggacccgttccagcaaatctccatcgcctgcctggagcgtaaagag
tcgctgctggtgtcggcccacacctcggccggtaagaccgcggttgccgagtatgccatc
gccatggccttcagggacaagcagcgcgtcatatacacgtcgcccctcaaggccctgagc
aaccaaaagtaccgggagctcagccacgagttcagcgacgtcggcctcatgacgggcgac
gtgagcttgtcccccaacgcaacctgcattgtcatgaccacggagatcttgcgcggtatg
ctctacaggggctccgaggtgctcagggaggtggcgtgggttgtgtttgacgagatacac
tacatgcgggacagggagcgcggcgtcgtgtgggaggagagcatcatcctcctgccaccc
gccatcaagatggtcttcctctccgccaccatgtccaacgccaccgagtttgcgcagtgg
atctgccacctgcacaagcagccgtgccatgttgtctacaccgacttcaggcccactccg
cttcaacattatgctttcgccatgggcggctccggcctctacctcatggtggacgacaag
ggccactttcgggacgacaacttcgccaagctgcagcagtcatccagaaacgctggcccg
gacgattccctcgcgcccccggggcggaggcgaggagggggaggcaggagaggtggagga
cgagggggtgccaaggcctctgctggagtatccacggacatttacaagatagtcaagatg
attatggagcgttccatgcagcccgtcattgtcttcagcttcagccgcagggagtgcgag
cagtatgcgctctcggtatccaagcttgatttcaacagcgaccaagagaagatggacgtg
gaacacgtgttttccaacgccatacagtgcctcagcgaggaagaccggagcctcccgccc
atccatcaactattaccgcttctcaagcgtggggttgccttccatcactcgggcctactc
cccatcttgaaagaaatagttgagatccttttccaggagggccttgtcaaggccttgttt
gctacagaaacgtttgcaatgggattgaatatgcctgctaagactgtcgtctttactgcc
ctacggaaatgggatggtgacgctcatcgttacatgtcgtcaggcgagtacatacagatg
agtggaagggctgggagacgcgggaaggacgagcgtgggatttgcatcataatgatcgat
gaccagatggatgtcagcacgtgcagggaaatgatcctggggaagcctgctccgctagtc
agcaccttcagactcagctactactcgttgctgaatttgatgagccgtgcagaggggcac
tttgacatggagtacgtgatgaaacattctttccatcagtttcagcacgagaagaatgtc
cccgaaatggagaacaggatcaacaagctggaacaagaagccgcattgctggatgcggcg
ggagaggagactgttgccgagtaccaccgtctaagactaaagcttgcagaacttgaaaga
cagctcatgtcagaaattatccggcctgatcggattattgtatttctacaacccggtcga
ttggtgaaagttcgtgacggagcagacgattggggatggggtgttgtcatcaatgtcgtc
aagaaacccacgcctggtggaccgctcccctcaaccattgtggcagcgccccgtgctgcc
tcgtacctggtagacacccttttactttgtgctccgggtatggaactggacggttcgcgt
ttgaaaccgaggccctgctcaccggggcagaaaggagagatgcatgtggtccccgtgcaa
atgaccctgctctgtgcaatcagtacactcagggtggctgttcccactgatttgcggcca
gcggatgcccgattgagtgtactgatggcaatgcaggagcttgaacgacgattcccggac
ggcttgccacggttggatcctgtggaggacatgcaaatagatgatccggagcttgtgagt
atcgtgaagcaaattgatgaggaggagaaaaaactggttgtccaccctttacacaagtcg
gagaaagaggcaagccattattcagctttccagaagaaggccgagctgttgacggaagca
cagcggctgaggtctagactgcgagattctcagctgcacaagtttcgggaagagcttcgg
aaccggacgagagtattgaagcggctgggacacataaacgagctctcagtcgtacagctt
aaaggtcgcgcagcttgcctgattgacaccgcggatgagctgcttgtagcggagctgatc
tttgaggggctcttcaacgatcttgatcaccatcagattgtggcgctctcgagctgcttt
ctaccaattgaaaaatccaatgagcaaattcatctcaaggcggagctggcctggcctttc
cggcgcctccaagacacggctcgaatgattgccgaggtggagcgggagtgcaaactggaa
acagaagtggagcactacgttgaaaagtttcaaccatatctgatggacgtgatttacagc
tggtccaagggatcaagctttgcggagatctgcgagatgacggacatatttgaaggtagc
attatccgggtggcaaggaggctggaagagtttttgaaccagctgcggttagttttccag
gccattggcaacggtgagctggagaagaagtttgaggcagggatcgagagcatacggcgg
ggcatcatgttcgccaactccttgtacctatga
DBGET
integrated database retrieval system
